Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjeM and epmA are separated by 263 nucleotides epmA and frdA are separated by 324 nucleotides
HEPCGN_10560: yjeM - glutamate/gamma-aminobutyrate family transporter YjeM, at 854,165 to 855,622
yjeM
HEPCGN_10565: epmA - elongation factor P--(R)-beta-lysine ligase, at 855,886 to 856,863
epmA
HEPCGN_10570: frdA - fumarate reductase (quinol) flavoprotein subunit, at 857,188 to 858,996
frdA
Position (kb) 855
856
857 Strain fitness (log2 ratio) -2
-1
0
1 at 855.027 kb on - strand, within yjeM at 855.127 kb on + strand, within yjeM at 855.167 kb on + strand, within yjeM at 855.167 kb on + strand, within yjeM at 855.191 kb on - strand, within yjeM at 855.206 kb on - strand, within yjeM at 855.295 kb on + strand, within yjeM at 855.296 kb on - strand, within yjeM at 855.325 kb on - strand, within yjeM at 855.325 kb on - strand, within yjeM at 855.364 kb on + strand, within yjeM at 855.384 kb on + strand, within yjeM at 855.400 kb on + strand, within yjeM at 855.401 kb on - strand, within yjeM at 855.439 kb on + strand, within yjeM at 855.458 kb on - strand, within yjeM at 855.825 kb on + strand at 855.826 kb on - strand at 855.826 kb on - strand at 855.826 kb on - strand at 855.831 kb on - strand at 855.865 kb on + strand at 855.866 kb on - strand at 855.967 kb on + strand at 856.063 kb on - strand, within epmA at 856.144 kb on - strand, within epmA at 856.146 kb on - strand, within epmA at 856.146 kb on - strand, within epmA at 856.148 kb on + strand, within epmA at 856.149 kb on - strand, within epmA at 856.255 kb on - strand, within epmA at 856.289 kb on - strand, within epmA at 856.419 kb on - strand, within epmA at 856.491 kb on - strand, within epmA at 856.524 kb on + strand, within epmA at 856.525 kb on - strand, within epmA at 856.737 kb on + strand, within epmA at 856.813 kb on + strand at 856.814 kb on - strand at 856.817 kb on - strand at 856.817 kb on - strand at 856.821 kb on + strand at 856.822 kb on - strand at 856.863 kb on + strand at 856.863 kb on + strand at 856.864 kb on - strand at 856.961 kb on + strand at 857.019 kb on - strand at 857.077 kb on + strand at 857.078 kb on - strand at 857.078 kb on - strand at 857.078 kb on - strand at 857.079 kb on + strand at 857.087 kb on + strand at 857.088 kb on - strand at 857.088 kb on - strand at 857.091 kb on + strand at 857.091 kb on + strand at 857.092 kb on - strand at 857.092 kb on - strand at 857.092 kb on - strand at 857.094 kb on - strand at 857.094 kb on - strand at 857.109 kb on + strand at 857.140 kb on + strand at 857.141 kb on - strand at 857.151 kb on - strand at 857.219 kb on + strand at 857.219 kb on + strand at 857.241 kb on - strand at 857.304 kb on - strand at 857.304 kb on - strand at 857.381 kb on - strand, within frdA at 857.528 kb on + strand, within frdA at 857.529 kb on - strand, within frdA at 857.529 kb on - strand, within frdA at 857.592 kb on + strand, within frdA at 857.791 kb on + strand, within frdA at 857.791 kb on + strand, within frdA at 857.791 kb on + strand, within frdA at 857.792 kb on - strand, within frdA
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 855,027 - yjeM HEPCGN_10560 0.59 -0.7 855,127 + yjeM HEPCGN_10560 0.66 +0.6 855,167 + yjeM HEPCGN_10560 0.69 -0.3 855,167 + yjeM HEPCGN_10560 0.69 +1.7 855,191 - yjeM HEPCGN_10560 0.70 +0.7 855,206 - yjeM HEPCGN_10560 0.71 +0.4 855,295 + yjeM HEPCGN_10560 0.78 -2.3 855,296 - yjeM HEPCGN_10560 0.78 -0.7 855,325 - yjeM HEPCGN_10560 0.80 +0.1 855,325 - yjeM HEPCGN_10560 0.80 +0.3 855,364 + yjeM HEPCGN_10560 0.82 -0.3 855,384 + yjeM HEPCGN_10560 0.84 +0.1 855,400 + yjeM HEPCGN_10560 0.85 -0.6 855,401 - yjeM HEPCGN_10560 0.85 +0.2 855,439 + yjeM HEPCGN_10560 0.87 +0.1 855,458 - yjeM HEPCGN_10560 0.89 +1.3 855,825 + +0.8 855,826 - -1.2 855,826 - +1.5 855,826 - +0.5 855,831 - -0.7 855,865 + +0.7 855,866 - -0.1 855,967 + +0.0 856,063 - epmA HEPCGN_10565 0.18 -1.7 856,144 - epmA HEPCGN_10565 0.26 -1.3 856,146 - epmA HEPCGN_10565 0.27 -0.2 856,146 - epmA HEPCGN_10565 0.27 -1.6 856,148 + epmA HEPCGN_10565 0.27 -1.8 856,149 - epmA HEPCGN_10565 0.27 +0.1 856,255 - epmA HEPCGN_10565 0.38 +0.2 856,289 - epmA HEPCGN_10565 0.41 +0.0 856,419 - epmA HEPCGN_10565 0.54 +0.3 856,491 - epmA HEPCGN_10565 0.62 -0.1 856,524 + epmA HEPCGN_10565 0.65 +0.2 856,525 - epmA HEPCGN_10565 0.65 -0.6 856,737 + epmA HEPCGN_10565 0.87 -0.8 856,813 + +1.3 856,814 - +0.2 856,817 - -0.1 856,817 - -0.9 856,821 + -0.4 856,822 - -1.0 856,863 + -1.8 856,863 + -1.7 856,864 - -0.8 856,961 + +0.1 857,019 - +0.6 857,077 + -0.0 857,078 - -0.3 857,078 - +0.1 857,078 - +0.3 857,079 + +0.1 857,087 + -0.3 857,088 - -0.0 857,088 - -0.3 857,091 + +0.3 857,091 + +0.7 857,092 - +1.0 857,092 - +0.5 857,092 - -0.4 857,094 - +0.1 857,094 - +0.8 857,109 + -1.0 857,140 + -0.8 857,141 - +0.1 857,151 - -1.5 857,219 + +1.3 857,219 + -0.0 857,241 - -0.1 857,304 - -0.2 857,304 - -0.9 857,381 - frdA HEPCGN_10570 0.11 -0.9 857,528 + frdA HEPCGN_10570 0.19 -2.6 857,529 - frdA HEPCGN_10570 0.19 -0.2 857,529 - frdA HEPCGN_10570 0.19 +0.2 857,592 + frdA HEPCGN_10570 0.22 -0.0 857,791 + frdA HEPCGN_10570 0.33 +0.1 857,791 + frdA HEPCGN_10570 0.33 -0.4 857,791 + frdA HEPCGN_10570 0.33 +0.4 857,792 - frdA HEPCGN_10570 0.33 +0.5
Or see this region's nucleotide sequence