Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybaN and priC are separated by 69 nucleotides priC and rsmS are separated by 13 nucleotides rsmS and mscK are separated by 211 nucleotides
HEPCGN_06790: ybaN - DUF454 domain-containing protein, at 91,971 to 92,348
ybaN
HEPCGN_06795: priC - primosomal replication protein N'', at 92,418 to 92,945
priC
HEPCGN_06800: rsmS - pleiotropic regulatory protein RsmS, at 92,959 to 93,120
rsmS
HEPCGN_06805: mscK - mechanosensitive channel MscK, at 93,332 to 96,694
mscK
Position (kb) 92
93
94 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 92.040 kb on + strand, within ybaN at 92.040 kb on + strand, within ybaN at 92.041 kb on - strand, within ybaN at 92.041 kb on - strand, within ybaN at 92.108 kb on + strand, within ybaN at 92.170 kb on - strand, within ybaN at 92.173 kb on + strand, within ybaN at 92.174 kb on - strand, within ybaN at 92.174 kb on - strand, within ybaN at 92.281 kb on - strand, within ybaN at 92.283 kb on + strand, within ybaN at 92.332 kb on - strand at 92.366 kb on + strand at 92.366 kb on + strand at 92.366 kb on + strand at 92.377 kb on + strand at 92.378 kb on - strand at 92.382 kb on + strand at 92.555 kb on - strand, within priC at 92.555 kb on - strand, within priC at 92.747 kb on + strand, within priC at 92.748 kb on - strand, within priC at 92.753 kb on + strand, within priC at 92.958 kb on + strand at 92.959 kb on - strand at 92.959 kb on - strand at 92.959 kb on - strand at 92.959 kb on - strand at 93.005 kb on + strand, within rsmS at 93.006 kb on - strand, within rsmS at 93.006 kb on - strand, within rsmS at 93.069 kb on - strand, within rsmS at 93.079 kb on + strand, within rsmS at 93.125 kb on + strand at 93.125 kb on + strand at 93.138 kb on + strand at 93.200 kb on + strand at 93.217 kb on - strand at 93.310 kb on + strand at 93.310 kb on + strand at 93.311 kb on - strand at 93.311 kb on - strand at 93.338 kb on + strand at 93.476 kb on - strand at 93.496 kb on + strand at 93.526 kb on - strand at 93.526 kb on - strand at 93.664 kb on - strand at 93.694 kb on + strand, within mscK at 93.695 kb on - strand, within mscK at 93.813 kb on - strand, within mscK at 93.829 kb on + strand, within mscK at 93.830 kb on - strand, within mscK at 94.015 kb on + strand, within mscK at 94.023 kb on + strand, within mscK at 94.023 kb on + strand, within mscK at 94.023 kb on + strand, within mscK at 94.023 kb on + strand, within mscK at 94.024 kb on - strand, within mscK at 94.024 kb on - strand, within mscK at 94.027 kb on + strand, within mscK at 94.027 kb on + strand, within mscK at 94.028 kb on - strand, within mscK at 94.036 kb on + strand, within mscK at 94.036 kb on + strand, within mscK
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 92,040 + ybaN HEPCGN_06790 0.18 -0.7 92,040 + ybaN HEPCGN_06790 0.18 +0.5 92,041 - ybaN HEPCGN_06790 0.19 +0.5 92,041 - ybaN HEPCGN_06790 0.19 +4.4 92,108 + ybaN HEPCGN_06790 0.36 +0.8 92,170 - ybaN HEPCGN_06790 0.53 -1.4 92,173 + ybaN HEPCGN_06790 0.53 +0.6 92,174 - ybaN HEPCGN_06790 0.54 +1.1 92,174 - ybaN HEPCGN_06790 0.54 +0.2 92,281 - ybaN HEPCGN_06790 0.82 +1.3 92,283 + ybaN HEPCGN_06790 0.83 -1.3 92,332 - -2.4 92,366 + -0.4 92,366 + -0.2 92,366 + -0.0 92,377 + -1.5 92,378 - -0.7 92,382 + -0.5 92,555 - priC HEPCGN_06795 0.26 +2.5 92,555 - priC HEPCGN_06795 0.26 +1.0 92,747 + priC HEPCGN_06795 0.62 +0.7 92,748 - priC HEPCGN_06795 0.62 +0.8 92,753 + priC HEPCGN_06795 0.63 +1.1 92,958 + -0.9 92,959 - -0.7 92,959 - -1.0 92,959 - -0.1 92,959 - -0.9 93,005 + rsmS HEPCGN_06800 0.28 -2.4 93,006 - rsmS HEPCGN_06800 0.29 -1.8 93,006 - rsmS HEPCGN_06800 0.29 -1.5 93,069 - rsmS HEPCGN_06800 0.68 +0.9 93,079 + rsmS HEPCGN_06800 0.74 +0.1 93,125 + +1.2 93,125 + +1.0 93,138 + -0.2 93,200 + +0.5 93,217 - -0.6 93,310 + -0.5 93,310 + +0.7 93,311 - +1.2 93,311 - -0.6 93,338 + +0.8 93,476 - +0.2 93,496 + +0.3 93,526 - -0.9 93,526 - -0.2 93,664 - -1.2 93,694 + mscK HEPCGN_06805 0.11 -0.2 93,695 - mscK HEPCGN_06805 0.11 +0.0 93,813 - mscK HEPCGN_06805 0.14 -0.2 93,829 + mscK HEPCGN_06805 0.15 -0.5 93,830 - mscK HEPCGN_06805 0.15 -0.5 94,015 + mscK HEPCGN_06805 0.20 +0.4 94,023 + mscK HEPCGN_06805 0.21 -0.5 94,023 + mscK HEPCGN_06805 0.21 +1.3 94,023 + mscK HEPCGN_06805 0.21 +0.2 94,023 + mscK HEPCGN_06805 0.21 -0.1 94,024 - mscK HEPCGN_06805 0.21 +0.8 94,024 - mscK HEPCGN_06805 0.21 +0.3 94,027 + mscK HEPCGN_06805 0.21 -0.2 94,027 + mscK HEPCGN_06805 0.21 +0.3 94,028 - mscK HEPCGN_06805 0.21 -0.5 94,036 + mscK HEPCGN_06805 0.21 +1.8 94,036 + mscK HEPCGN_06805 0.21 -0.7
Or see this region's nucleotide sequence