Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydcZ and HEPCGN_03405 are separated by 53 nucleotides HEPCGN_03405 and HEPCGN_03410 are separated by 13 nucleotides HEPCGN_03410 and HEPCGN_03415 are separated by 185 nucleotides HEPCGN_03415 and yaiO are separated by 689 nucleotides
HEPCGN_03400: ydcZ - Putative inner membrane exporter, YdcZ, at 583,200 to 584,165
ydcZ
HEPCGN_03405: HEPCGN_03405 - cytoplasmic protein, at 584,219 to 584,977
_03405
HEPCGN_03410: HEPCGN_03410 - DeoR/GlpR transcriptional regulator, at 584,991 to 586,205
_03410
HEPCGN_03415: HEPCGN_03415 - DDE-Tnp-IS66-C domain-containing protein, at 586,391 to 586,507
_03415
HEPCGN_03420: yaiO - Outer membrane protein YaiO, at 587,197 to 587,928
yaiO
Position (kb) 584
585
586
587 Strain fitness (log2 ratio) -2
-1
0
1
2 at 583.995 kb on - strand, within ydcZ at 584.071 kb on - strand at 584.317 kb on + strand, within HEPCGN_03405 at 584.646 kb on + strand, within HEPCGN_03405 at 584.719 kb on + strand, within HEPCGN_03405 at 584.812 kb on + strand, within HEPCGN_03405 at 584.874 kb on + strand, within HEPCGN_03405 at 584.878 kb on + strand, within HEPCGN_03405 at 585.195 kb on - strand, within HEPCGN_03410 at 585.446 kb on + strand, within HEPCGN_03410 at 585.605 kb on - strand, within HEPCGN_03410 at 585.939 kb on - strand, within HEPCGN_03410 at 586.245 kb on - strand at 586.378 kb on + strand at 586.473 kb on + strand, within HEPCGN_03415 at 586.507 kb on + strand at 586.558 kb on + strand at 586.559 kb on - strand at 586.592 kb on + strand at 586.779 kb on - strand at 586.858 kb on + strand at 587.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 583,995 - ydcZ HEPCGN_03400 0.82 -1.2 584,071 - +0.8 584,317 + HEPCGN_03405 0.13 -2.6 584,646 + HEPCGN_03405 0.56 -0.7 584,719 + HEPCGN_03405 0.66 +0.4 584,812 + HEPCGN_03405 0.78 +0.1 584,874 + HEPCGN_03405 0.86 -0.2 584,878 + HEPCGN_03405 0.87 -1.5 585,195 - HEPCGN_03410 0.17 +2.0 585,446 + HEPCGN_03410 0.37 +0.9 585,605 - HEPCGN_03410 0.51 -0.3 585,939 - HEPCGN_03410 0.78 +0.3 586,245 - +1.7 586,378 + +0.1 586,473 + HEPCGN_03415 0.70 +1.1 586,507 + +0.1 586,558 + +0.3 586,559 - +0.3 586,592 + -0.5 586,779 - -0.7 586,858 + +0.4 587,178 + -0.2
Or see this region's nucleotide sequence