Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnB and ais are separated by 289 nucleotides ais and nudI are separated by 38 nucleotides nudI and yfaZ are separated by 277 nucleotides yfaZ and yfaY are separated by 99 nucleotides
HEPCGN_22210: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 3,200,885 to 3,202,042
arnB
HEPCGN_22215: ais - Lipopolysaccharide core heptose(II)-phosphate phosphatase, at 3,202,332 to 3,202,934
ais
HEPCGN_22220: nudI - nucleoside triphosphatase NudI, at 3,202,973 to 3,203,398
nudI
HEPCGN_22225: yfaZ - Outer membrane protein YfaZ, at 3,203,676 to 3,204,218
yfaZ
HEPCGN_22230: yfaY - nicotinamide mononucleotide deamidase-related protein YfaY, at 3,204,318 to 3,205,520
yfaY
Position (kb) 3202
3203
3204 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3202.048 kb on - strand at 3202.452 kb on - strand, within ais at 3202.557 kb on - strand, within ais at 3202.565 kb on + strand, within ais at 3202.566 kb on - strand, within ais at 3202.566 kb on - strand, within ais at 3202.568 kb on + strand, within ais at 3202.568 kb on + strand, within ais at 3202.641 kb on + strand, within ais at 3202.642 kb on - strand, within ais at 3202.653 kb on - strand, within ais at 3202.794 kb on - strand, within ais at 3202.822 kb on - strand, within ais at 3202.824 kb on - strand, within ais at 3202.864 kb on - strand, within ais at 3203.158 kb on - strand, within nudI at 3203.158 kb on - strand, within nudI at 3203.158 kb on - strand, within nudI at 3203.349 kb on + strand, within nudI at 3203.437 kb on - strand at 3203.582 kb on + strand at 3203.654 kb on - strand at 3204.024 kb on + strand, within yfaZ at 3204.024 kb on + strand, within yfaZ at 3204.027 kb on + strand, within yfaZ at 3204.027 kb on + strand, within yfaZ at 3204.101 kb on + strand, within yfaZ at 3204.130 kb on - strand, within yfaZ at 3204.192 kb on + strand at 3204.259 kb on + strand at 3204.285 kb on - strand at 3204.313 kb on + strand at 3204.314 kb on - strand at 3204.322 kb on + strand at 3204.358 kb on + strand at 3204.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 3,202,048 - -0.4 3,202,452 - ais HEPCGN_22215 0.20 +0.4 3,202,557 - ais HEPCGN_22215 0.37 +0.3 3,202,565 + ais HEPCGN_22215 0.39 -0.9 3,202,566 - ais HEPCGN_22215 0.39 -0.5 3,202,566 - ais HEPCGN_22215 0.39 +0.0 3,202,568 + ais HEPCGN_22215 0.39 -0.7 3,202,568 + ais HEPCGN_22215 0.39 -0.2 3,202,641 + ais HEPCGN_22215 0.51 -0.4 3,202,642 - ais HEPCGN_22215 0.51 -0.6 3,202,653 - ais HEPCGN_22215 0.53 -0.4 3,202,794 - ais HEPCGN_22215 0.77 -0.4 3,202,822 - ais HEPCGN_22215 0.81 -0.2 3,202,824 - ais HEPCGN_22215 0.82 -0.9 3,202,864 - ais HEPCGN_22215 0.88 -1.6 3,203,158 - nudI HEPCGN_22220 0.43 -0.4 3,203,158 - nudI HEPCGN_22220 0.43 -2.9 3,203,158 - nudI HEPCGN_22220 0.43 +0.5 3,203,349 + nudI HEPCGN_22220 0.88 -0.5 3,203,437 - +0.7 3,203,582 + +1.3 3,203,654 - +0.1 3,204,024 + yfaZ HEPCGN_22225 0.64 -0.3 3,204,024 + yfaZ HEPCGN_22225 0.64 -0.2 3,204,027 + yfaZ HEPCGN_22225 0.65 +0.3 3,204,027 + yfaZ HEPCGN_22225 0.65 -0.2 3,204,101 + yfaZ HEPCGN_22225 0.78 +0.1 3,204,130 - yfaZ HEPCGN_22225 0.84 +1.3 3,204,192 + -0.1 3,204,259 + +0.1 3,204,285 - -0.1 3,204,313 + -0.6 3,204,314 - +0.6 3,204,322 + -0.4 3,204,358 + +0.3 3,204,380 + -0.2
Or see this region's nucleotide sequence