Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cheA and cheW are separated by 20 nucleotides cheW and tar are separated by 144 nucleotides tar and HEPCGN_04560 are separated by 45 nucleotides HEPCGN_04560 and cheR are separated by 125 nucleotides
HEPCGN_04540: cheA - chemotaxis protein CheA, at 789,840 to 791,804
cheA
HEPCGN_04545: cheW - chemotaxis protein CheW, at 791,825 to 792,328
cheW
HEPCGN_04555: tar - methyl-accepting chemotaxis protein II, at 792,473 to 794,134
tar
HEPCGN_04560: HEPCGN_04560 - Dipeptide chemoreceptor protein, at 794,180 to 794,299
_04560
HEPCGN_04565: cheR - protein-glutamate O-methyltransferase CheR, at 794,425 to 795,285
cheR
Position (kb) 792
793
794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 791.520 kb on - strand, within cheA at 791.593 kb on + strand, within cheA at 791.593 kb on + strand, within cheA at 791.636 kb on - strand at 791.676 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.784 kb on - strand at 791.818 kb on + strand at 791.844 kb on + strand at 791.886 kb on + strand, within cheW at 791.886 kb on + strand, within cheW at 791.891 kb on - strand, within cheW at 791.891 kb on - strand, within cheW at 791.891 kb on - strand, within cheW at 792.068 kb on + strand, within cheW at 792.084 kb on + strand, within cheW at 792.301 kb on - strand at 792.304 kb on + strand at 792.305 kb on - strand at 792.327 kb on - strand at 792.472 kb on + strand at 792.478 kb on + strand at 792.535 kb on - strand at 792.541 kb on + strand at 792.610 kb on - strand at 792.648 kb on + strand, within tar at 792.649 kb on - strand, within tar at 792.649 kb on - strand, within tar at 792.655 kb on - strand, within tar at 792.722 kb on - strand, within tar at 792.722 kb on - strand, within tar at 792.782 kb on + strand, within tar at 792.783 kb on - strand, within tar at 792.784 kb on + strand, within tar at 792.891 kb on - strand, within tar at 792.899 kb on + strand, within tar at 792.917 kb on + strand, within tar at 793.115 kb on - strand, within tar at 793.115 kb on - strand, within tar at 793.298 kb on + strand, within tar at 793.298 kb on + strand, within tar at 793.299 kb on - strand, within tar at 793.299 kb on - strand, within tar at 793.299 kb on - strand, within tar at 793.535 kb on - strand, within tar at 793.535 kb on - strand, within tar at 793.559 kb on - strand, within tar at 793.594 kb on + strand, within tar at 794.143 kb on + strand at 794.144 kb on - strand at 794.185 kb on + strand at 794.191 kb on + strand at 794.334 kb on - strand at 794.382 kb on - strand at 794.459 kb on + strand at 794.559 kb on + strand, within cheR at 794.575 kb on + strand, within cheR at 794.629 kb on + strand, within cheR at 794.822 kb on + strand, within cheR at 794.841 kb on + strand, within cheR at 794.841 kb on + strand, within cheR at 794.842 kb on - strand, within cheR at 794.922 kb on + strand, within cheR at 795.038 kb on - strand, within cheR at 795.127 kb on + strand, within cheR
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 791,520 - cheA HEPCGN_04540 0.85 +0.6 791,593 + cheA HEPCGN_04540 0.89 -0.4 791,593 + cheA HEPCGN_04540 0.89 -2.9 791,636 - -0.8 791,676 - -0.9 791,784 - -0.4 791,784 - +1.7 791,784 - -0.3 791,818 + +0.5 791,844 + -0.1 791,886 + cheW HEPCGN_04545 0.12 -0.1 791,886 + cheW HEPCGN_04545 0.12 -0.0 791,891 - cheW HEPCGN_04545 0.13 +0.3 791,891 - cheW HEPCGN_04545 0.13 -0.0 791,891 - cheW HEPCGN_04545 0.13 -0.0 792,068 + cheW HEPCGN_04545 0.48 +0.4 792,084 + cheW HEPCGN_04545 0.51 -0.2 792,301 - -1.6 792,304 + -0.2 792,305 - +0.8 792,327 - +1.1 792,472 + -0.5 792,478 + +0.0 792,535 - +0.3 792,541 + +1.4 792,610 - +0.4 792,648 + tar HEPCGN_04555 0.11 -0.8 792,649 - tar HEPCGN_04555 0.11 -1.4 792,649 - tar HEPCGN_04555 0.11 -0.3 792,655 - tar HEPCGN_04555 0.11 +1.2 792,722 - tar HEPCGN_04555 0.15 +0.9 792,722 - tar HEPCGN_04555 0.15 -1.7 792,782 + tar HEPCGN_04555 0.19 +0.3 792,783 - tar HEPCGN_04555 0.19 -0.3 792,784 + tar HEPCGN_04555 0.19 -1.4 792,891 - tar HEPCGN_04555 0.25 -0.3 792,899 + tar HEPCGN_04555 0.26 +0.4 792,917 + tar HEPCGN_04555 0.27 -0.3 793,115 - tar HEPCGN_04555 0.39 -1.0 793,115 - tar HEPCGN_04555 0.39 -1.2 793,298 + tar HEPCGN_04555 0.50 +0.5 793,298 + tar HEPCGN_04555 0.50 -0.7 793,299 - tar HEPCGN_04555 0.50 +0.2 793,299 - tar HEPCGN_04555 0.50 +2.1 793,299 - tar HEPCGN_04555 0.50 -0.0 793,535 - tar HEPCGN_04555 0.64 -0.3 793,535 - tar HEPCGN_04555 0.64 -0.6 793,559 - tar HEPCGN_04555 0.65 -0.3 793,594 + tar HEPCGN_04555 0.67 +0.7 794,143 + -0.7 794,144 - +0.7 794,185 + +1.7 794,191 + +0.5 794,334 - -0.4 794,382 - -1.1 794,459 + +0.9 794,559 + cheR HEPCGN_04565 0.16 +0.3 794,575 + cheR HEPCGN_04565 0.17 -0.4 794,629 + cheR HEPCGN_04565 0.24 -0.4 794,822 + cheR HEPCGN_04565 0.46 +0.3 794,841 + cheR HEPCGN_04565 0.48 +0.3 794,841 + cheR HEPCGN_04565 0.48 +0.6 794,842 - cheR HEPCGN_04565 0.48 -0.2 794,922 + cheR HEPCGN_04565 0.58 -0.6 795,038 - cheR HEPCGN_04565 0.71 +1.3 795,127 + cheR HEPCGN_04565 0.82 -0.8
Or see this region's nucleotide sequence