Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03345 and HEPCGN_03350 are separated by 444 nucleotides HEPCGN_03350 and HEPCGN_03355 are separated by 134 nucleotides HEPCGN_03355 and tra5 overlap by 35 nucleotides
HEPCGN_03345: HEPCGN_03345 - hypothetical protein, at 575,046 to 575,528
_03345
HEPCGN_03350: HEPCGN_03350 - hypothetical protein, at 575,973 to 576,530
_03350
HEPCGN_03355: HEPCGN_03355 - Ferredoxin reductase, at 576,665 to 577,399
_03355
HEPCGN_03360: tra5 - IS3 family transposase, at 577,365 to 577,736
tra5
Position (kb) 575
576
577 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 575.023 kb on + strand at 575.039 kb on + strand at 575.065 kb on + strand at 575.176 kb on + strand, within HEPCGN_03345 at 575.177 kb on - strand, within HEPCGN_03345 at 575.177 kb on - strand, within HEPCGN_03345 at 575.177 kb on - strand, within HEPCGN_03345 at 575.266 kb on - strand, within HEPCGN_03345 at 575.354 kb on + strand, within HEPCGN_03345 at 575.389 kb on - strand, within HEPCGN_03345 at 575.391 kb on + strand, within HEPCGN_03345 at 575.543 kb on + strand at 575.655 kb on + strand at 575.678 kb on + strand at 575.679 kb on - strand at 575.679 kb on - strand at 575.842 kb on + strand at 576.112 kb on + strand, within HEPCGN_03350 at 576.198 kb on - strand, within HEPCGN_03350 at 576.198 kb on - strand, within HEPCGN_03350 at 576.198 kb on - strand, within HEPCGN_03350 at 576.202 kb on + strand, within HEPCGN_03350 at 576.202 kb on + strand, within HEPCGN_03350 at 576.203 kb on - strand, within HEPCGN_03350 at 576.215 kb on + strand, within HEPCGN_03350 at 576.353 kb on + strand, within HEPCGN_03350 at 576.473 kb on - strand, within HEPCGN_03350 at 576.592 kb on - strand at 576.842 kb on - strand, within HEPCGN_03355 at 577.231 kb on + strand, within HEPCGN_03355 at 577.231 kb on + strand, within HEPCGN_03355 at 577.234 kb on + strand, within HEPCGN_03355 at 577.235 kb on - strand, within HEPCGN_03355 at 577.273 kb on - strand, within HEPCGN_03355
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 575,023 + +0.5 575,039 + +1.0 575,065 + +0.9 575,176 + HEPCGN_03345 0.27 +0.4 575,177 - HEPCGN_03345 0.27 -0.7 575,177 - HEPCGN_03345 0.27 +0.7 575,177 - HEPCGN_03345 0.27 +0.3 575,266 - HEPCGN_03345 0.46 -0.1 575,354 + HEPCGN_03345 0.64 -0.1 575,389 - HEPCGN_03345 0.71 +0.2 575,391 + HEPCGN_03345 0.71 +0.9 575,543 + +0.3 575,655 + -0.6 575,678 + +0.3 575,679 - -1.6 575,679 - -0.5 575,842 + +1.7 576,112 + HEPCGN_03350 0.25 -0.8 576,198 - HEPCGN_03350 0.40 -1.1 576,198 - HEPCGN_03350 0.40 -2.0 576,198 - HEPCGN_03350 0.40 -0.1 576,202 + HEPCGN_03350 0.41 -0.3 576,202 + HEPCGN_03350 0.41 +0.5 576,203 - HEPCGN_03350 0.41 -0.3 576,215 + HEPCGN_03350 0.43 -0.3 576,353 + HEPCGN_03350 0.68 +2.5 576,473 - HEPCGN_03350 0.90 -1.0 576,592 - -2.1 576,842 - HEPCGN_03355 0.24 +0.2 577,231 + HEPCGN_03355 0.77 -0.4 577,231 + HEPCGN_03355 0.77 -0.5 577,234 + HEPCGN_03355 0.77 +3.3 577,235 - HEPCGN_03355 0.78 +0.3 577,273 - HEPCGN_03355 0.83 +0.2
Or see this region's nucleotide sequence