Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_26685 and HEPCGN_26690 are separated by 9 nucleotides HEPCGN_26690 and HEPCGN_26695 are separated by 315 nucleotides HEPCGN_26695 and tfaE overlap by 29 nucleotides tfaE and HEPCGN_26705 overlap by 1 nucleotides HEPCGN_26705 and spoIVCA are separated by 30 nucleotides
HEPCGN_26685: HEPCGN_26685 - phage major tail tube protein, at 4,094,171 to 4,094,686
_26685
HEPCGN_26690: HEPCGN_26690 - Phage tail sheath protein, at 4,094,696 to 4,094,950
_26690
HEPCGN_26695: HEPCGN_26695 - tail fiber assembly protein, at 4,095,266 to 4,095,703
_26695
HEPCGN_26700: tfaE - Prophage tail fiber assembly -like protein TfaE, at 4,095,675 to 4,096,277
tfaE
HEPCGN_26705: HEPCGN_26705 - Phage tail protein, at 4,096,277 to 4,096,816
_26705
HEPCGN_26710: spoIVCA - DNA-invertase, at 4,096,847 to 4,097,413
spoIVCA
Position (kb) 4095
4096
4097 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4094.731 kb on - strand, within HEPCGN_26690 at 4094.731 kb on - strand, within HEPCGN_26690 at 4094.787 kb on + strand, within HEPCGN_26690 at 4094.788 kb on - strand, within HEPCGN_26690 at 4094.788 kb on - strand, within HEPCGN_26690 at 4094.874 kb on + strand, within HEPCGN_26690 at 4094.930 kb on + strand at 4094.930 kb on + strand at 4094.974 kb on + strand at 4094.978 kb on + strand at 4095.022 kb on - strand at 4095.122 kb on + strand at 4095.123 kb on - strand at 4095.123 kb on - strand at 4095.126 kb on + strand at 4095.127 kb on - strand at 4095.181 kb on - strand at 4095.213 kb on - strand at 4095.246 kb on + strand at 4095.310 kb on + strand, within HEPCGN_26695 at 4095.320 kb on + strand, within HEPCGN_26695 at 4095.326 kb on - strand, within HEPCGN_26695 at 4095.326 kb on - strand, within HEPCGN_26695 at 4095.374 kb on + strand, within HEPCGN_26695 at 4095.545 kb on - strand, within HEPCGN_26695 at 4095.569 kb on - strand, within HEPCGN_26695 at 4095.605 kb on - strand, within HEPCGN_26695 at 4095.827 kb on + strand, within tfaE at 4096.028 kb on + strand, within tfaE at 4096.061 kb on - strand, within tfaE at 4096.061 kb on - strand, within tfaE at 4096.061 kb on - strand, within tfaE at 4096.115 kb on + strand, within tfaE at 4096.215 kb on - strand, within tfaE at 4096.224 kb on - strand at 4096.260 kb on + strand at 4096.444 kb on + strand, within HEPCGN_26705 at 4096.557 kb on - strand, within HEPCGN_26705 at 4096.557 kb on - strand, within HEPCGN_26705 at 4096.568 kb on + strand, within HEPCGN_26705 at 4096.633 kb on + strand, within HEPCGN_26705 at 4096.634 kb on - strand, within HEPCGN_26705 at 4096.807 kb on + strand at 4096.808 kb on - strand at 4096.863 kb on + strand at 4096.864 kb on - strand at 4096.864 kb on - strand at 4096.904 kb on - strand, within spoIVCA at 4096.904 kb on - strand, within spoIVCA at 4096.904 kb on - strand, within spoIVCA at 4097.254 kb on - strand, within spoIVCA at 4097.270 kb on - strand, within spoIVCA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 4,094,731 - HEPCGN_26690 0.14 -0.4 4,094,731 - HEPCGN_26690 0.14 +0.0 4,094,787 + HEPCGN_26690 0.36 +0.5 4,094,788 - HEPCGN_26690 0.36 -0.2 4,094,788 - HEPCGN_26690 0.36 +0.2 4,094,874 + HEPCGN_26690 0.70 +0.2 4,094,930 + +2.3 4,094,930 + -0.1 4,094,974 + +0.6 4,094,978 + +1.8 4,095,022 - +1.4 4,095,122 + +1.0 4,095,123 - +0.8 4,095,123 - +0.9 4,095,126 + -1.0 4,095,127 - +0.6 4,095,181 - +1.8 4,095,213 - -0.0 4,095,246 + +0.3 4,095,310 + HEPCGN_26695 0.10 +0.4 4,095,320 + HEPCGN_26695 0.12 +1.0 4,095,326 - HEPCGN_26695 0.14 -0.4 4,095,326 - HEPCGN_26695 0.14 +0.3 4,095,374 + HEPCGN_26695 0.25 -0.8 4,095,545 - HEPCGN_26695 0.64 -0.7 4,095,569 - HEPCGN_26695 0.69 -0.3 4,095,605 - HEPCGN_26695 0.77 -1.9 4,095,827 + tfaE HEPCGN_26700 0.25 -0.8 4,096,028 + tfaE HEPCGN_26700 0.59 +0.4 4,096,061 - tfaE HEPCGN_26700 0.64 -1.1 4,096,061 - tfaE HEPCGN_26700 0.64 -1.5 4,096,061 - tfaE HEPCGN_26700 0.64 +0.3 4,096,115 + tfaE HEPCGN_26700 0.73 +1.8 4,096,215 - tfaE HEPCGN_26700 0.90 -1.1 4,096,224 - +0.1 4,096,260 + -0.9 4,096,444 + HEPCGN_26705 0.31 +0.1 4,096,557 - HEPCGN_26705 0.52 -0.4 4,096,557 - HEPCGN_26705 0.52 -1.4 4,096,568 + HEPCGN_26705 0.54 +1.0 4,096,633 + HEPCGN_26705 0.66 +0.4 4,096,634 - HEPCGN_26705 0.66 -1.4 4,096,807 + +0.4 4,096,808 - +1.1 4,096,863 + +0.5 4,096,864 - -0.2 4,096,864 - +0.2 4,096,904 - spoIVCA HEPCGN_26710 0.10 +0.4 4,096,904 - spoIVCA HEPCGN_26710 0.10 -0.6 4,096,904 - spoIVCA HEPCGN_26710 0.10 +0.8 4,097,254 - spoIVCA HEPCGN_26710 0.72 -1.4 4,097,270 - spoIVCA HEPCGN_26710 0.75 -0.3
Or see this region's nucleotide sequence