Strain Fitness in Escherichia coli ECOR38 around HEPCGN_13970

Experiment: Bas67

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nteilA and HEPCGN_13970 are separated by 202 nucleotidesHEPCGN_13970 and HEPCGN_13975 are separated by 43 nucleotides HEPCGN_13965: eilA - HilA family transcriptional regulator EilA, at 1,548,962 to 1,550,659 eilA HEPCGN_13970: HEPCGN_13970 - IpaD/SipD/SspD family type III secretion system needle tip protein, at 1,550,862 to 1,552,211 _13970 HEPCGN_13975: HEPCGN_13975 - hypothetical protein, at 1,552,255 to 1,553,406 _13975 Position (kb) 1550 1551 1552 1553Strain fitness (log2 ratio) -2 -1 0 1 2at 1550.192 kb on - strand, within eilAat 1550.396 kb on - strand, within eilAat 1550.960 kb on - strandat 1551.347 kb on - strand, within HEPCGN_13970at 1551.468 kb on - strand, within HEPCGN_13970at 1551.591 kb on - strand, within HEPCGN_13970at 1551.779 kb on + strand, within HEPCGN_13970at 1551.828 kb on - strand, within HEPCGN_13970at 1552.064 kb on + strand, within HEPCGN_13970at 1552.257 kb on - strandat 1552.779 kb on + strand, within HEPCGN_13975at 1552.780 kb on - strand, within HEPCGN_13975at 1552.819 kb on + strand, within HEPCGN_13975at 1552.951 kb on - strand, within HEPCGN_13975at 1552.962 kb on + strand, within HEPCGN_13975at 1552.977 kb on - strand, within HEPCGN_13975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
remove
1,550,192 - eilA HEPCGN_13965 0.72 -0.1
1,550,396 - eilA HEPCGN_13965 0.84 +0.3
1,550,960 - +0.3
1,551,347 - HEPCGN_13970 0.36 -1.6
1,551,468 - HEPCGN_13970 0.45 -1.3
1,551,591 - HEPCGN_13970 0.54 +1.8
1,551,779 + HEPCGN_13970 0.68 +0.2
1,551,828 - HEPCGN_13970 0.72 -0.7
1,552,064 + HEPCGN_13970 0.89 -1.1
1,552,257 - -0.3
1,552,779 + HEPCGN_13975 0.45 -0.2
1,552,780 - HEPCGN_13975 0.46 +0.3
1,552,819 + HEPCGN_13975 0.49 +0.7
1,552,951 - HEPCGN_13975 0.60 -1.9
1,552,962 + HEPCGN_13975 0.61 -0.2
1,552,977 - HEPCGN_13975 0.63 +0.7

Or see this region's nucleotide sequence