Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_10950 and HEPCGN_10955 are separated by 18 nucleotides HEPCGN_10955 and HEPCGN_10960 are separated by 265 nucleotides HEPCGN_10960 and HEPCGN_10965 are separated by 68 nucleotides HEPCGN_10965 and HEPCGN_10970 are separated by 257 nucleotides
HEPCGN_10950: HEPCGN_10950 - proQ/FINO family protein, at 932,981 to 933,460
_10950
HEPCGN_10955: HEPCGN_10955 - hypothetical protein, at 933,479 to 934,027
_10955
HEPCGN_10960: HEPCGN_10960 - AlpA family transcriptional regulator, at 934,293 to 934,529
_10960
HEPCGN_10965: HEPCGN_10965 - hypothetical protein, at 934,598 to 935,170
_10965
HEPCGN_10970: HEPCGN_10970 - DUF3296 domain-containing protein, at 935,428 to 935,994
_10970
Position (kb) 934
935 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 933.300 kb on - strand, within HEPCGN_10950 at 933.300 kb on - strand, within HEPCGN_10950 at 933.318 kb on - strand, within HEPCGN_10950 at 933.499 kb on + strand at 933.579 kb on + strand, within HEPCGN_10955 at 933.592 kb on + strand, within HEPCGN_10955 at 933.797 kb on + strand, within HEPCGN_10955 at 933.798 kb on - strand, within HEPCGN_10955 at 933.800 kb on + strand, within HEPCGN_10955 at 933.801 kb on - strand, within HEPCGN_10955 at 933.842 kb on - strand, within HEPCGN_10955 at 933.842 kb on - strand, within HEPCGN_10955 at 933.845 kb on - strand, within HEPCGN_10955 at 933.875 kb on - strand, within HEPCGN_10955 at 934.105 kb on - strand at 934.117 kb on - strand at 934.117 kb on - strand at 934.123 kb on + strand at 934.123 kb on + strand at 934.157 kb on - strand at 934.201 kb on + strand at 934.201 kb on + strand at 934.201 kb on + strand at 934.202 kb on - strand at 934.202 kb on - strand at 934.253 kb on + strand at 934.460 kb on - strand, within HEPCGN_10960 at 934.460 kb on - strand, within HEPCGN_10960 at 934.460 kb on - strand, within HEPCGN_10960 at 934.554 kb on + strand at 934.864 kb on - strand, within HEPCGN_10965 at 934.893 kb on + strand, within HEPCGN_10965 at 934.893 kb on + strand, within HEPCGN_10965 at 935.144 kb on - strand at 935.155 kb on - strand at 935.218 kb on + strand at 935.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 933,300 - HEPCGN_10950 0.66 -0.9 933,300 - HEPCGN_10950 0.66 +0.2 933,318 - HEPCGN_10950 0.70 +0.4 933,499 + -0.8 933,579 + HEPCGN_10955 0.18 -1.3 933,592 + HEPCGN_10955 0.21 -0.1 933,797 + HEPCGN_10955 0.58 -0.1 933,798 - HEPCGN_10955 0.58 -1.1 933,800 + HEPCGN_10955 0.58 +0.8 933,801 - HEPCGN_10955 0.59 -1.0 933,842 - HEPCGN_10955 0.66 +0.5 933,842 - HEPCGN_10955 0.66 -1.2 933,845 - HEPCGN_10955 0.67 -0.5 933,875 - HEPCGN_10955 0.72 -0.4 934,105 - -1.0 934,117 - -0.9 934,117 - +0.1 934,123 + -2.3 934,123 + -1.1 934,157 - +0.7 934,201 + +0.6 934,201 + -0.4 934,201 + +0.6 934,202 - +1.6 934,202 - -1.1 934,253 + -0.1 934,460 - HEPCGN_10960 0.70 -0.3 934,460 - HEPCGN_10960 0.70 -1.0 934,460 - HEPCGN_10960 0.70 -0.4 934,554 + +0.5 934,864 - HEPCGN_10965 0.46 +0.7 934,893 + HEPCGN_10965 0.51 -0.1 934,893 + HEPCGN_10965 0.51 +0.0 935,144 - -0.1 935,155 - +3.3 935,218 + -0.2 935,218 + +0.7
Or see this region's nucleotide sequence