Strain Fitness in Escherichia coli ECOR38 around HEPCGN_10840

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_10830 and arsR are separated by 70 nucleotidesarsR and tetR(B overlap by 23 nucleotidestetR(B and tet(B are separated by 81 nucleotides HEPCGN_10830: HEPCGN_10830 - amino acid-binding protein, at 908,939 to 909,325 _10830 HEPCGN_10835: arsR - transcriptional regulator, at 909,396 to 910,019 arsR HEPCGN_10840: tetR(B - tetracycline resistance transcriptional repressor TetR(B), at 909,997 to 910,620 tetR(B HEPCGN_10845: tet(B - tetracycline efflux MFS transporter Tet(B), at 910,702 to 911,907 tet(B Position (kb) 909 910 911Strain fitness (log2 ratio) -3 -2 -1 0 1at 909.003 kb on + strand, within HEPCGN_10830at 909.044 kb on - strand, within HEPCGN_10830at 909.129 kb on + strand, within HEPCGN_10830at 909.482 kb on + strand, within arsRat 909.485 kb on - strand, within arsRat 909.700 kb on + strand, within arsRat 910.135 kb on - strand, within tetR(Bat 910.227 kb on - strand, within tetR(Bat 910.504 kb on - strand, within tetR(Bat 910.504 kb on - strand, within tetR(Bat 910.520 kb on - strand, within tetR(Bat 910.520 kb on - strand, within tetR(Bat 910.520 kb on - strand, within tetR(Bat 910.609 kb on + strandat 910.735 kb on - strandat 910.934 kb on + strand, within tet(Bat 910.959 kb on - strand, within tet(Bat 911.142 kb on + strand, within tet(Bat 911.176 kb on - strand, within tet(Bat 911.266 kb on - strand, within tet(Bat 911.399 kb on + strand, within tet(Bat 911.477 kb on + strand, within tet(Bat 911.477 kb on + strand, within tet(B

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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909,003 + HEPCGN_10830 0.17 -0.3
909,044 - HEPCGN_10830 0.27 -0.1
909,129 + HEPCGN_10830 0.49 -2.3
909,482 + arsR HEPCGN_10835 0.14 -0.2
909,485 - arsR HEPCGN_10835 0.14 +0.4
909,700 + arsR HEPCGN_10835 0.49 +0.0
910,135 - tetR(B HEPCGN_10840 0.22 +0.3
910,227 - tetR(B HEPCGN_10840 0.37 +0.7
910,504 - tetR(B HEPCGN_10840 0.81 -0.7
910,504 - tetR(B HEPCGN_10840 0.81 +0.7
910,520 - tetR(B HEPCGN_10840 0.84 +1.0
910,520 - tetR(B HEPCGN_10840 0.84 -3.4
910,520 - tetR(B HEPCGN_10840 0.84 -1.3
910,609 + +0.5
910,735 - -0.3
910,934 + tet(B HEPCGN_10845 0.19 -0.3
910,959 - tet(B HEPCGN_10845 0.21 -1.9
911,142 + tet(B HEPCGN_10845 0.36 -1.9
911,176 - tet(B HEPCGN_10845 0.39 +0.4
911,266 - tet(B HEPCGN_10845 0.47 +0.5
911,399 + tet(B HEPCGN_10845 0.58 +0.6
911,477 + tet(B HEPCGN_10845 0.64 -0.6
911,477 + tet(B HEPCGN_10845 0.64 +0.6

Or see this region's nucleotide sequence