Strain Fitness in Escherichia coli ECOR38 around HEPCGN_06405

Experiment: Bas67

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHEPCGN_06400 and HEPCGN_06405 are separated by 166 nucleotides HEPCGN_06400: HEPCGN_06400 - phage portal protein, at 1,140,481 to 1,142,082 _06400 HEPCGN_06405: HEPCGN_06405 - hypothetical protein, at 1,142,249 to 1,142,740 _06405 Position (kb) 1142 1143Strain fitness (log2 ratio) -2 -1 0 1 2at 1141.363 kb on - strand, within HEPCGN_06400at 1141.429 kb on + strand, within HEPCGN_06400at 1141.589 kb on - strand, within HEPCGN_06400at 1141.663 kb on + strand, within HEPCGN_06400at 1141.663 kb on + strand, within HEPCGN_06400at 1141.760 kb on + strand, within HEPCGN_06400at 1141.824 kb on - strand, within HEPCGN_06400at 1141.837 kb on - strand, within HEPCGN_06400at 1141.996 kb on - strandat 1142.081 kb on - strandat 1142.111 kb on - strandat 1142.138 kb on + strandat 1142.521 kb on - strand, within HEPCGN_06405at 1142.651 kb on - strand, within HEPCGN_06405at 1142.654 kb on + strand, within HEPCGN_06405at 1142.699 kb on + strandat 1142.700 kb on - strandat 1142.732 kb on + strandat 1142.819 kb on + strandat 1142.820 kb on - strandat 1142.868 kb on - strandat 1142.868 kb on - strandat 1142.868 kb on - strandat 1142.962 kb on + strandat 1143.335 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
remove
1,141,363 - HEPCGN_06400 0.55 -0.4
1,141,429 + HEPCGN_06400 0.59 +0.9
1,141,589 - HEPCGN_06400 0.69 +0.4
1,141,663 + HEPCGN_06400 0.74 +0.8
1,141,663 + HEPCGN_06400 0.74 +0.2
1,141,760 + HEPCGN_06400 0.80 -0.0
1,141,824 - HEPCGN_06400 0.84 -0.2
1,141,837 - HEPCGN_06400 0.85 +0.0
1,141,996 - -1.3
1,142,081 - -0.3
1,142,111 - -1.0
1,142,138 + +0.1
1,142,521 - HEPCGN_06405 0.55 +1.4
1,142,651 - HEPCGN_06405 0.82 -2.2
1,142,654 + HEPCGN_06405 0.82 -0.8
1,142,699 + +0.5
1,142,700 - +0.1
1,142,732 + +1.8
1,142,819 + +0.3
1,142,820 - +0.6
1,142,868 - +0.4
1,142,868 - -0.7
1,142,868 - -0.9
1,142,962 + -0.5
1,143,335 - +0.2

Or see this region's nucleotide sequence