Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05015

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaV and dmlA are separated by 250 nucleotidesdmlA and dmlR are separated by 102 nucleotides HEPCGN_05010: yeaV - BCCT family transporter YeaV, at 878,162 to 879,772 yeaV HEPCGN_05015: dmlA - multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase, at 880,023 to 881,108 dmlA HEPCGN_05020: dmlR - DNA-binding transcriptional regulator DmlR, at 881,211 to 882,134 dmlR Position (kb) 880 881 882Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 879.031 kb on + strand, within yeaVat 879.032 kb on - strand, within yeaVat 879.257 kb on - strand, within yeaVat 879.303 kb on + strand, within yeaVat 879.314 kb on + strand, within yeaVat 879.314 kb on + strand, within yeaVat 879.314 kb on + strand, within yeaVat 879.328 kb on + strand, within yeaVat 879.329 kb on - strand, within yeaVat 879.329 kb on - strand, within yeaVat 879.330 kb on + strand, within yeaVat 879.331 kb on - strand, within yeaVat 879.369 kb on + strand, within yeaVat 879.370 kb on - strand, within yeaVat 879.439 kb on - strand, within yeaVat 879.469 kb on + strand, within yeaVat 879.493 kb on + strand, within yeaVat 879.522 kb on + strand, within yeaVat 879.648 kb on + strandat 879.824 kb on + strandat 879.824 kb on + strandat 879.845 kb on + strandat 879.846 kb on - strandat 879.902 kb on + strandat 880.443 kb on - strand, within dmlAat 880.443 kb on - strand, within dmlAat 880.559 kb on + strand, within dmlAat 880.626 kb on + strand, within dmlAat 880.658 kb on + strand, within dmlAat 880.801 kb on + strand, within dmlAat 880.891 kb on + strand, within dmlAat 880.957 kb on + strand, within dmlAat 880.958 kb on - strand, within dmlAat 881.091 kb on - strandat 881.157 kb on - strandat 881.175 kb on + strandat 881.199 kb on - strandat 881.199 kb on - strandat 881.415 kb on + strand, within dmlRat 881.830 kb on + strand, within dmlRat 881.838 kb on - strand, within dmlRat 881.858 kb on + strand, within dmlRat 881.980 kb on + strand, within dmlRat 881.993 kb on - strand, within dmlRat 882.003 kb on + strand, within dmlR

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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879,031 + yeaV HEPCGN_05010 0.54 -0.6
879,032 - yeaV HEPCGN_05010 0.54 -0.1
879,257 - yeaV HEPCGN_05010 0.68 -0.2
879,303 + yeaV HEPCGN_05010 0.71 -0.2
879,314 + yeaV HEPCGN_05010 0.72 -0.2
879,314 + yeaV HEPCGN_05010 0.72 -1.3
879,314 + yeaV HEPCGN_05010 0.72 -0.3
879,328 + yeaV HEPCGN_05010 0.72 -1.6
879,329 - yeaV HEPCGN_05010 0.72 +0.0
879,329 - yeaV HEPCGN_05010 0.72 -2.8
879,330 + yeaV HEPCGN_05010 0.73 +0.1
879,331 - yeaV HEPCGN_05010 0.73 +0.4
879,369 + yeaV HEPCGN_05010 0.75 -0.6
879,370 - yeaV HEPCGN_05010 0.75 +0.1
879,439 - yeaV HEPCGN_05010 0.79 -0.3
879,469 + yeaV HEPCGN_05010 0.81 -1.6
879,493 + yeaV HEPCGN_05010 0.83 -0.9
879,522 + yeaV HEPCGN_05010 0.84 +0.3
879,648 + -1.6
879,824 + +0.0
879,824 + +2.4
879,845 + -0.9
879,846 - +0.3
879,902 + -0.2
880,443 - dmlA HEPCGN_05015 0.39 -1.2
880,443 - dmlA HEPCGN_05015 0.39 -0.2
880,559 + dmlA HEPCGN_05015 0.49 +0.7
880,626 + dmlA HEPCGN_05015 0.56 -1.4
880,658 + dmlA HEPCGN_05015 0.58 -0.6
880,801 + dmlA HEPCGN_05015 0.72 +0.1
880,891 + dmlA HEPCGN_05015 0.80 -1.1
880,957 + dmlA HEPCGN_05015 0.86 -1.9
880,958 - dmlA HEPCGN_05015 0.86 -1.6
881,091 - -1.8
881,157 - -0.8
881,175 + +0.6
881,199 - +0.3
881,199 - -0.8
881,415 + dmlR HEPCGN_05020 0.22 +0.4
881,830 + dmlR HEPCGN_05020 0.67 -0.2
881,838 - dmlR HEPCGN_05020 0.68 +1.9
881,858 + dmlR HEPCGN_05020 0.70 +0.1
881,980 + dmlR HEPCGN_05020 0.83 -0.0
881,993 - dmlR HEPCGN_05020 0.85 -2.6
882,003 + dmlR HEPCGN_05020 0.86 -0.6

Or see this region's nucleotide sequence