Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt manZ and manY are separated by 12 nucleotides manY and manX are separated by 62 nucleotides manX and yoaE are separated by 462 nucleotides
HEPCGN_04915: manZ - PTS mannose transporter subunit IID, at 858,057 to 858,908
manZ
HEPCGN_04920: manY - PTS mannose transporter subunit IIC, at 858,921 to 859,721
manY
HEPCGN_04925: manX - PTS mannose transporter subunit IIAB, at 859,784 to 860,755
manX
HEPCGN_04930: yoaE - CNNM family cation transport protein YoaE, at 861,218 to 862,774
yoaE
Position (kb)
859
860
861 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 858.800 kb on + strand, within manZ at 858.800 kb on + strand, within manZ at 858.833 kb on + strand at 858.887 kb on + strand at 858.899 kb on + strand at 858.900 kb on - strand at 858.923 kb on - strand at 858.989 kb on - strand at 859.010 kb on - strand, within manY at 859.022 kb on + strand, within manY at 859.023 kb on - strand, within manY at 859.078 kb on - strand, within manY at 859.376 kb on + strand, within manY at 859.377 kb on - strand, within manY at 859.379 kb on + strand, within manY at 859.476 kb on - strand, within manY at 859.559 kb on + strand, within manY at 859.571 kb on + strand, within manY at 859.572 kb on - strand, within manY at 859.689 kb on + strand at 859.690 kb on - strand at 859.690 kb on - strand at 859.738 kb on - strand at 859.749 kb on - strand at 859.780 kb on + strand at 859.780 kb on + strand at 859.786 kb on - strand at 859.894 kb on + strand, within manX at 860.007 kb on - strand, within manX at 860.097 kb on - strand, within manX at 860.097 kb on - strand, within manX at 860.399 kb on + strand, within manX at 860.554 kb on + strand, within manX at 860.736 kb on - strand at 860.743 kb on + strand at 860.744 kb on - strand at 860.761 kb on - strand at 860.769 kb on + strand at 860.773 kb on - strand at 860.773 kb on - strand at 860.958 kb on + strand at 861.020 kb on + strand at 861.053 kb on + strand at 861.110 kb on + strand at 861.133 kb on + strand at 861.164 kb on + strand at 861.191 kb on + strand at 861.203 kb on - strand at 861.446 kb on - strand, within yoaE at 861.485 kb on - strand, within yoaE at 861.485 kb on - strand, within yoaE at 861.652 kb on + strand, within yoaE
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 858,800 + manZ HEPCGN_04915 0.87 +0.0 858,800 + manZ HEPCGN_04915 0.87 -0.1 858,833 + +0.0 858,887 + +0.8 858,899 + +2.1 858,900 - +0.5 858,923 - +0.6 858,989 - +0.1 859,010 - manY HEPCGN_04920 0.11 +0.0 859,022 + manY HEPCGN_04920 0.13 +0.8 859,023 - manY HEPCGN_04920 0.13 +0.1 859,078 - manY HEPCGN_04920 0.20 +0.3 859,376 + manY HEPCGN_04920 0.57 +0.8 859,377 - manY HEPCGN_04920 0.57 -1.2 859,379 + manY HEPCGN_04920 0.57 +0.4 859,476 - manY HEPCGN_04920 0.69 +0.2 859,559 + manY HEPCGN_04920 0.80 -0.5 859,571 + manY HEPCGN_04920 0.81 -0.2 859,572 - manY HEPCGN_04920 0.81 -0.8 859,689 + -1.5 859,690 - -0.7 859,690 - -0.7 859,738 - +0.5 859,749 - -0.5 859,780 + +0.2 859,780 + +0.1 859,786 - +0.4 859,894 + manX HEPCGN_04925 0.11 -1.0 860,007 - manX HEPCGN_04925 0.23 -0.1 860,097 - manX HEPCGN_04925 0.32 -3.6 860,097 - manX HEPCGN_04925 0.32 -1.0 860,399 + manX HEPCGN_04925 0.63 -0.7 860,554 + manX HEPCGN_04925 0.79 +0.4 860,736 - +0.4 860,743 + -0.7 860,744 - -0.1 860,761 - +0.6 860,769 + +0.2 860,773 - +0.5 860,773 - +1.3 860,958 + +0.4 861,020 + +0.9 861,053 + -0.8 861,110 + +1.5 861,133 + +0.3 861,164 + -1.1 861,191 + -0.3 861,203 - +0.2 861,446 - yoaE HEPCGN_04930 0.15 +0.1 861,485 - yoaE HEPCGN_04930 0.17 +0.7 861,485 - yoaE HEPCGN_04930 0.17 +0.7 861,652 + yoaE HEPCGN_04930 0.28 -1.1
Or see this region's nucleotide sequence