Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04925

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmanZ and manY are separated by 12 nucleotidesmanY and manX are separated by 62 nucleotidesmanX and yoaE are separated by 462 nucleotides HEPCGN_04915: manZ - PTS mannose transporter subunit IID, at 858,057 to 858,908 manZ HEPCGN_04920: manY - PTS mannose transporter subunit IIC, at 858,921 to 859,721 manY HEPCGN_04925: manX - PTS mannose transporter subunit IIAB, at 859,784 to 860,755 manX HEPCGN_04930: yoaE - CNNM family cation transport protein YoaE, at 861,218 to 862,774 yoaE Position (kb) 859 860 861Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 858.800 kb on + strand, within manZat 858.800 kb on + strand, within manZat 858.833 kb on + strandat 858.887 kb on + strandat 858.899 kb on + strandat 858.900 kb on - strandat 858.923 kb on - strandat 858.989 kb on - strandat 859.010 kb on - strand, within manYat 859.022 kb on + strand, within manYat 859.023 kb on - strand, within manYat 859.078 kb on - strand, within manYat 859.376 kb on + strand, within manYat 859.377 kb on - strand, within manYat 859.379 kb on + strand, within manYat 859.476 kb on - strand, within manYat 859.559 kb on + strand, within manYat 859.571 kb on + strand, within manYat 859.572 kb on - strand, within manYat 859.689 kb on + strandat 859.690 kb on - strandat 859.690 kb on - strandat 859.738 kb on - strandat 859.749 kb on - strandat 859.780 kb on + strandat 859.780 kb on + strandat 859.786 kb on - strandat 859.894 kb on + strand, within manXat 860.007 kb on - strand, within manXat 860.097 kb on - strand, within manXat 860.097 kb on - strand, within manXat 860.399 kb on + strand, within manXat 860.554 kb on + strand, within manXat 860.736 kb on - strandat 860.743 kb on + strandat 860.744 kb on - strandat 860.761 kb on - strandat 860.769 kb on + strandat 860.773 kb on - strandat 860.773 kb on - strandat 860.958 kb on + strandat 861.020 kb on + strandat 861.053 kb on + strandat 861.110 kb on + strandat 861.133 kb on + strandat 861.164 kb on + strandat 861.191 kb on + strandat 861.203 kb on - strandat 861.446 kb on - strand, within yoaEat 861.485 kb on - strand, within yoaEat 861.485 kb on - strand, within yoaEat 861.652 kb on + strand, within yoaE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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858,800 + manZ HEPCGN_04915 0.87 +0.0
858,800 + manZ HEPCGN_04915 0.87 -0.1
858,833 + +0.0
858,887 + +0.8
858,899 + +2.1
858,900 - +0.5
858,923 - +0.6
858,989 - +0.1
859,010 - manY HEPCGN_04920 0.11 +0.0
859,022 + manY HEPCGN_04920 0.13 +0.8
859,023 - manY HEPCGN_04920 0.13 +0.1
859,078 - manY HEPCGN_04920 0.20 +0.3
859,376 + manY HEPCGN_04920 0.57 +0.8
859,377 - manY HEPCGN_04920 0.57 -1.2
859,379 + manY HEPCGN_04920 0.57 +0.4
859,476 - manY HEPCGN_04920 0.69 +0.2
859,559 + manY HEPCGN_04920 0.80 -0.5
859,571 + manY HEPCGN_04920 0.81 -0.2
859,572 - manY HEPCGN_04920 0.81 -0.8
859,689 + -1.5
859,690 - -0.7
859,690 - -0.7
859,738 - +0.5
859,749 - -0.5
859,780 + +0.2
859,780 + +0.1
859,786 - +0.4
859,894 + manX HEPCGN_04925 0.11 -1.0
860,007 - manX HEPCGN_04925 0.23 -0.1
860,097 - manX HEPCGN_04925 0.32 -3.6
860,097 - manX HEPCGN_04925 0.32 -1.0
860,399 + manX HEPCGN_04925 0.63 -0.7
860,554 + manX HEPCGN_04925 0.79 +0.4
860,736 - +0.4
860,743 + -0.7
860,744 - -0.1
860,761 - +0.6
860,769 + +0.2
860,773 - +0.5
860,773 - +1.3
860,958 + +0.4
861,020 + +0.9
861,053 + -0.8
861,110 + +1.5
861,133 + +0.3
861,164 + -1.1
861,191 + -0.3
861,203 - +0.2
861,446 - yoaE HEPCGN_04930 0.15 +0.1
861,485 - yoaE HEPCGN_04930 0.17 +0.7
861,485 - yoaE HEPCGN_04930 0.17 +0.7
861,652 + yoaE HEPCGN_04930 0.28 -1.1

Or see this region's nucleotide sequence