Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04035

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliP and fliO overlap by 1 nucleotidesfliO and fliN are separated by 2 nucleotidesfliN and fliM overlap by 4 nucleotides HEPCGN_04025: fliP - flagellar type III secretion system pore protein FliP, at 706,747 to 707,484 fliP HEPCGN_04030: fliO - flagellar type III secretion system protein FliO, at 707,484 to 707,849 fliO HEPCGN_04035: fliN - flagellar motor switch protein FliN, at 707,852 to 708,265 fliN HEPCGN_04040: fliM - flagellar motor switch protein FliM, at 708,262 to 709,266 fliM Position (kb) 707 708 709Strain fitness (log2 ratio) -2 -1 0 1at 707.185 kb on - strand, within fliPat 707.221 kb on + strand, within fliPat 707.229 kb on + strand, within fliPat 707.229 kb on + strand, within fliPat 707.229 kb on + strand, within fliPat 707.280 kb on + strand, within fliPat 707.280 kb on + strand, within fliPat 707.393 kb on - strand, within fliPat 707.576 kb on + strand, within fliOat 707.834 kb on + strandat 707.834 kb on + strandat 707.913 kb on + strand, within fliNat 707.951 kb on + strand, within fliNat 708.250 kb on + strandat 708.250 kb on + strandat 708.250 kb on + strandat 708.293 kb on - strandat 708.316 kb on + strandat 708.618 kb on + strand, within fliMat 708.621 kb on + strand, within fliMat 708.772 kb on - strand, within fliMat 708.772 kb on - strand, within fliMat 708.954 kb on + strand, within fliMat 708.954 kb on + strand, within fliMat 709.002 kb on - strand, within fliMat 709.095 kb on + strand, within fliMat 709.254 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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707,185 - fliP HEPCGN_04025 0.59 -0.3
707,221 + fliP HEPCGN_04025 0.64 +0.7
707,229 + fliP HEPCGN_04025 0.65 -0.3
707,229 + fliP HEPCGN_04025 0.65 -1.6
707,229 + fliP HEPCGN_04025 0.65 -0.7
707,280 + fliP HEPCGN_04025 0.72 -0.3
707,280 + fliP HEPCGN_04025 0.72 +0.8
707,393 - fliP HEPCGN_04025 0.88 -0.3
707,576 + fliO HEPCGN_04030 0.25 -1.2
707,834 + +0.2
707,834 + +1.5
707,913 + fliN HEPCGN_04035 0.15 -1.2
707,951 + fliN HEPCGN_04035 0.24 -0.5
708,250 + -2.2
708,250 + -0.2
708,250 + +0.3
708,293 - -0.1
708,316 + -0.7
708,618 + fliM HEPCGN_04040 0.35 -0.6
708,621 + fliM HEPCGN_04040 0.36 +0.1
708,772 - fliM HEPCGN_04040 0.51 -0.3
708,772 - fliM HEPCGN_04040 0.51 +0.3
708,954 + fliM HEPCGN_04040 0.69 -0.6
708,954 + fliM HEPCGN_04040 0.69 -2.1
709,002 - fliM HEPCGN_04040 0.74 -0.7
709,095 + fliM HEPCGN_04040 0.83 +1.3
709,254 + -0.1

Or see this region's nucleotide sequence