Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03980

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyedI and yodC are separated by 78 nucleotidesyodC and yedQ are separated by 170 nucleotides HEPCGN_03975: yedI - Inner membrane protein YedI, at 699,987 to 700,904 yedI HEPCGN_03980: yodC - Uncharacterized protein YodC, at 700,983 to 701,165 yodC HEPCGN_03985: yedQ - cellulose biosynthesis regulator YedQ, at 701,336 to 703,030 yedQ Position (kb) 700 701 702Strain fitness (log2 ratio) -1 0 1 2at 700.050 kb on - strandat 700.108 kb on + strand, within yedIat 700.316 kb on + strand, within yedIat 700.316 kb on + strand, within yedIat 700.316 kb on + strand, within yedIat 700.316 kb on + strand, within yedIat 700.418 kb on + strand, within yedIat 700.502 kb on + strand, within yedIat 700.537 kb on + strand, within yedIat 700.554 kb on + strand, within yedIat 700.733 kb on - strand, within yedIat 700.733 kb on - strand, within yedIat 700.739 kb on + strand, within yedIat 700.739 kb on + strand, within yedIat 700.805 kb on - strand, within yedIat 700.805 kb on - strand, within yedIat 700.903 kb on - strandat 700.918 kb on + strandat 700.918 kb on + strandat 700.982 kb on + strandat 700.991 kb on + strandat 701.060 kb on + strand, within yodCat 701.079 kb on + strand, within yodCat 701.079 kb on + strand, within yodCat 701.080 kb on - strand, within yodCat 701.172 kb on - strandat 701.242 kb on + strandat 701.243 kb on - strandat 701.258 kb on + strandat 701.265 kb on - strandat 701.414 kb on - strandat 701.446 kb on + strandat 701.489 kb on + strandat 701.490 kb on - strandat 701.490 kb on - strandat 701.490 kb on - strandat 701.490 kb on - strandat 701.492 kb on - strandat 701.507 kb on - strand, within yedQat 701.733 kb on + strand, within yedQat 701.734 kb on - strand, within yedQat 701.734 kb on - strand, within yedQat 701.811 kb on - strand, within yedQat 701.861 kb on + strand, within yedQat 701.862 kb on - strand, within yedQat 701.882 kb on + strand, within yedQat 701.909 kb on - strand, within yedQat 701.920 kb on - strand, within yedQat 701.933 kb on + strand, within yedQat 701.997 kb on + strand, within yedQat 702.074 kb on - strand, within yedQat 702.077 kb on - strand, within yedQat 702.077 kb on - strand, within yedQat 702.086 kb on + strand, within yedQat 702.122 kb on - strand, within yedQat 702.122 kb on - strand, within yedQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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700,050 - -0.6
700,108 + yedI HEPCGN_03975 0.13 +0.6
700,316 + yedI HEPCGN_03975 0.36 -0.3
700,316 + yedI HEPCGN_03975 0.36 +0.3
700,316 + yedI HEPCGN_03975 0.36 +0.4
700,316 + yedI HEPCGN_03975 0.36 -0.0
700,418 + yedI HEPCGN_03975 0.47 -0.4
700,502 + yedI HEPCGN_03975 0.56 -0.5
700,537 + yedI HEPCGN_03975 0.60 -0.6
700,554 + yedI HEPCGN_03975 0.62 +2.2
700,733 - yedI HEPCGN_03975 0.81 +0.7
700,733 - yedI HEPCGN_03975 0.81 -0.5
700,739 + yedI HEPCGN_03975 0.82 -0.5
700,739 + yedI HEPCGN_03975 0.82 +0.4
700,805 - yedI HEPCGN_03975 0.89 +0.7
700,805 - yedI HEPCGN_03975 0.89 +0.7
700,903 - -0.6
700,918 + +0.5
700,918 + +0.3
700,982 + +1.0
700,991 + -0.3
701,060 + yodC HEPCGN_03980 0.42 -0.2
701,079 + yodC HEPCGN_03980 0.52 -1.1
701,079 + yodC HEPCGN_03980 0.52 -0.8
701,080 - yodC HEPCGN_03980 0.53 -0.9
701,172 - -0.3
701,242 + -0.4
701,243 - -0.2
701,258 + +0.3
701,265 - +0.6
701,414 - -1.0
701,446 + +0.3
701,489 + -0.8
701,490 - -0.5
701,490 - -0.3
701,490 - +0.4
701,490 - +0.4
701,492 - +0.9
701,507 - yedQ HEPCGN_03985 0.10 -1.0
701,733 + yedQ HEPCGN_03985 0.23 -0.3
701,734 - yedQ HEPCGN_03985 0.23 -1.6
701,734 - yedQ HEPCGN_03985 0.23 -1.4
701,811 - yedQ HEPCGN_03985 0.28 -0.8
701,861 + yedQ HEPCGN_03985 0.31 -0.3
701,862 - yedQ HEPCGN_03985 0.31 +0.1
701,882 + yedQ HEPCGN_03985 0.32 -1.2
701,909 - yedQ HEPCGN_03985 0.34 -0.5
701,920 - yedQ HEPCGN_03985 0.34 +0.4
701,933 + yedQ HEPCGN_03985 0.35 -1.3
701,997 + yedQ HEPCGN_03985 0.39 -0.5
702,074 - yedQ HEPCGN_03985 0.44 -0.8
702,077 - yedQ HEPCGN_03985 0.44 +0.0
702,077 - yedQ HEPCGN_03985 0.44 +0.8
702,086 + yedQ HEPCGN_03985 0.44 -0.4
702,122 - yedQ HEPCGN_03985 0.46 -0.5
702,122 - yedQ HEPCGN_03985 0.46 -1.7

Or see this region's nucleotide sequence