Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yehA and rcnB are separated by 81 nucleotides rcnB and rcnA are separated by 218 nucleotides rcnA and rcnR are separated by 120 nucleotides rcnR and thiM are separated by 222 nucleotides
HEPCGN_02735: yehA - putative fimbrial-like adhesin protein, at 458,323 to 459,357
yehA
HEPCGN_02740: rcnB - Ni(II)/Co(II) efflux transporter accessory subunit RcnB, at 459,439 to 459,777
rcnB
HEPCGN_02745: rcnA - Nickel/cobalt efflux system RcnA, at 459,996 to 460,793
rcnA
HEPCGN_02750: rcnR - Ni(II)/Co(II)-binding transcriptional repressor RcnR, at 460,914 to 461,186
rcnR
HEPCGN_02755: thiM - hydroxyethylthiazole kinase, at 461,409 to 462,197
thiM
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1 at 459.249 kb on + strand, within yehA at 459.356 kb on - strand at 459.525 kb on - strand, within rcnB at 459.561 kb on + strand, within rcnB at 459.565 kb on + strand, within rcnB at 459.603 kb on - strand, within rcnB at 459.618 kb on + strand, within rcnB at 459.639 kb on + strand, within rcnB at 459.687 kb on + strand, within rcnB at 459.763 kb on - strand at 459.816 kb on - strand at 459.829 kb on + strand at 459.834 kb on + strand at 459.834 kb on + strand at 459.834 kb on + strand at 459.835 kb on - strand at 459.949 kb on - strand at 460.006 kb on - strand at 460.024 kb on - strand at 460.024 kb on - strand at 460.033 kb on + strand at 460.033 kb on + strand at 460.033 kb on + strand at 460.033 kb on + strand at 460.033 kb on + strand at 460.033 kb on + strand at 460.033 kb on + strand at 460.034 kb on - strand at 460.095 kb on - strand, within rcnA at 460.499 kb on + strand, within rcnA at 460.604 kb on + strand, within rcnA at 460.729 kb on - strand at 460.873 kb on - strand at 461.029 kb on + strand, within rcnR at 461.184 kb on + strand at 461.227 kb on - strand at 461.247 kb on + strand at 461.248 kb on - strand at 461.326 kb on - strand at 461.408 kb on + strand at 461.408 kb on + strand at 461.489 kb on + strand, within thiM at 461.525 kb on + strand, within thiM
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 459,249 + yehA HEPCGN_02735 0.89 +0.6 459,356 - -0.7 459,525 - rcnB HEPCGN_02740 0.25 -0.6 459,561 + rcnB HEPCGN_02740 0.36 +0.1 459,565 + rcnB HEPCGN_02740 0.37 -1.4 459,603 - rcnB HEPCGN_02740 0.48 -0.3 459,618 + rcnB HEPCGN_02740 0.53 +0.5 459,639 + rcnB HEPCGN_02740 0.59 -0.2 459,687 + rcnB HEPCGN_02740 0.73 -1.7 459,763 - -1.1 459,816 - +0.1 459,829 + -1.5 459,834 + +0.1 459,834 + +0.4 459,834 + +0.8 459,835 - -0.5 459,949 - -0.2 460,006 - -0.4 460,024 - -0.7 460,024 - +0.0 460,033 + +1.0 460,033 + -1.0 460,033 + +0.2 460,033 + -2.5 460,033 + +0.5 460,033 + +0.3 460,033 + +0.9 460,034 - -0.2 460,095 - rcnA HEPCGN_02745 0.12 -1.4 460,499 + rcnA HEPCGN_02745 0.63 -0.6 460,604 + rcnA HEPCGN_02745 0.76 -0.6 460,729 - +0.0 460,873 - -0.1 461,029 + rcnR HEPCGN_02750 0.42 +0.1 461,184 + +0.2 461,227 - +0.9 461,247 + -0.2 461,248 - +0.1 461,326 - +0.0 461,408 + -0.1 461,408 + -0.7 461,489 + thiM HEPCGN_02755 0.10 -0.1 461,525 + thiM HEPCGN_02755 0.15 -1.0
Or see this region's nucleotide sequence