Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02490 and HEPCGN_02495 are separated by 141 nucleotides HEPCGN_02495 and HEPCGN_02500 are separated by 41 nucleotides HEPCGN_02500 and HEPCGN_02505 are separated by 290 nucleotides HEPCGN_02505 and HEPCGN_02510 overlap by 4 nucleotides
HEPCGN_02490: HEPCGN_02490 - Protein TonB, at 402,565 to 402,891
_02490
HEPCGN_02495: HEPCGN_02495 - DUF3950 domain-containing protein, at 403,033 to 403,224
_02495
HEPCGN_02500: HEPCGN_02500 - HNH endonuclease, at 403,266 to 403,631
_02500
HEPCGN_02505: HEPCGN_02505 - terminase small subunit, at 403,922 to 404,485
_02505
HEPCGN_02510: HEPCGN_02510 - Putative phage terminase, large subunit, at 404,482 to 405,471
_02510
Position (kb) 403
404 Strain fitness (log2 ratio) -2
-1
0
1 at 402.441 kb on + strand at 402.442 kb on - strand at 402.491 kb on + strand at 402.491 kb on + strand at 402.532 kb on + strand at 402.619 kb on - strand, within HEPCGN_02490 at 402.663 kb on - strand, within HEPCGN_02490 at 402.663 kb on - strand, within HEPCGN_02490 at 402.679 kb on + strand, within HEPCGN_02490 at 402.680 kb on - strand, within HEPCGN_02490 at 402.694 kb on + strand, within HEPCGN_02490 at 402.696 kb on + strand, within HEPCGN_02490 at 402.696 kb on + strand, within HEPCGN_02490 at 402.697 kb on - strand, within HEPCGN_02490 at 402.699 kb on - strand, within HEPCGN_02490 at 402.803 kb on + strand, within HEPCGN_02490 at 402.927 kb on - strand at 402.949 kb on - strand at 402.980 kb on + strand at 402.981 kb on - strand at 403.000 kb on + strand at 403.224 kb on + strand at 403.225 kb on - strand at 403.228 kb on + strand at 403.281 kb on - strand at 403.325 kb on + strand, within HEPCGN_02500 at 403.385 kb on + strand, within HEPCGN_02500 at 403.385 kb on + strand, within HEPCGN_02500 at 403.415 kb on + strand, within HEPCGN_02500 at 403.416 kb on - strand, within HEPCGN_02500 at 403.488 kb on - strand, within HEPCGN_02500 at 403.562 kb on + strand, within HEPCGN_02500 at 403.737 kb on - strand at 403.843 kb on - strand at 404.233 kb on + strand, within HEPCGN_02505 at 404.240 kb on + strand, within HEPCGN_02505 at 404.242 kb on + strand, within HEPCGN_02505 at 404.242 kb on + strand, within HEPCGN_02505 at 404.242 kb on + strand, within HEPCGN_02505 at 404.275 kb on + strand, within HEPCGN_02505 at 404.363 kb on - strand, within HEPCGN_02505 at 404.486 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 402,441 + -1.4 402,442 - +0.6 402,491 + -0.4 402,491 + +1.0 402,532 + -0.1 402,619 - HEPCGN_02490 0.17 -0.0 402,663 - HEPCGN_02490 0.30 -0.1 402,663 - HEPCGN_02490 0.30 -0.0 402,679 + HEPCGN_02490 0.35 +0.4 402,680 - HEPCGN_02490 0.35 -2.2 402,694 + HEPCGN_02490 0.39 +0.1 402,696 + HEPCGN_02490 0.40 +0.5 402,696 + HEPCGN_02490 0.40 -0.6 402,697 - HEPCGN_02490 0.40 +0.4 402,699 - HEPCGN_02490 0.41 +0.4 402,803 + HEPCGN_02490 0.73 +0.4 402,927 - -0.3 402,949 - +1.1 402,980 + -1.1 402,981 - -0.1 403,000 + -0.0 403,224 + +0.2 403,225 - -0.8 403,228 + +0.3 403,281 - +0.9 403,325 + HEPCGN_02500 0.16 -0.9 403,385 + HEPCGN_02500 0.33 -0.2 403,385 + HEPCGN_02500 0.33 -1.4 403,415 + HEPCGN_02500 0.41 -0.6 403,416 - HEPCGN_02500 0.41 -0.8 403,488 - HEPCGN_02500 0.61 -0.3 403,562 + HEPCGN_02500 0.81 -0.1 403,737 - -0.5 403,843 - +0.9 404,233 + HEPCGN_02505 0.55 +0.2 404,240 + HEPCGN_02505 0.56 +1.3 404,242 + HEPCGN_02505 0.57 -0.2 404,242 + HEPCGN_02505 0.57 -0.1 404,242 + HEPCGN_02505 0.57 -1.5 404,275 + HEPCGN_02505 0.63 +0.4 404,363 - HEPCGN_02505 0.78 -0.5 404,486 + -0.2
Or see this region's nucleotide sequence