Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_01260 and HEPCGN_01265 are separated by 23 nucleotides HEPCGN_01265 and HEPCGN_01270 overlap by 1 nucleotides
HEPCGN_01260: HEPCGN_01260 - C4-dicarboxylate ABC transporter, at 177,857 to 178,825
_01260
HEPCGN_01265: HEPCGN_01265 - C4-dicarboxylate ABC transporter permease, at 178,849 to 179,346
_01265
HEPCGN_01270: HEPCGN_01270 - C4-dicarboxylate ABC transporter, at 179,346 to 180,656
_01270
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 177.927 kb on + strand at 178.105 kb on + strand, within HEPCGN_01260 at 178.280 kb on + strand, within HEPCGN_01260 at 178.286 kb on + strand, within HEPCGN_01260 at 178.542 kb on - strand, within HEPCGN_01260 at 178.609 kb on - strand, within HEPCGN_01260 at 178.615 kb on + strand, within HEPCGN_01260 at 178.631 kb on + strand, within HEPCGN_01260 at 178.645 kb on - strand, within HEPCGN_01260 at 178.717 kb on + strand, within HEPCGN_01260 at 178.837 kb on - strand at 178.935 kb on + strand, within HEPCGN_01265 at 179.153 kb on + strand, within HEPCGN_01265 at 179.307 kb on - strand at 179.366 kb on - strand at 179.412 kb on - strand at 179.554 kb on + strand, within HEPCGN_01270 at 179.555 kb on - strand, within HEPCGN_01270 at 179.587 kb on + strand, within HEPCGN_01270 at 179.596 kb on - strand, within HEPCGN_01270 at 179.737 kb on + strand, within HEPCGN_01270 at 179.822 kb on + strand, within HEPCGN_01270 at 179.823 kb on - strand, within HEPCGN_01270 at 179.832 kb on - strand, within HEPCGN_01270 at 180.056 kb on - strand, within HEPCGN_01270 at 180.056 kb on - strand, within HEPCGN_01270 at 180.119 kb on - strand, within HEPCGN_01270 at 180.127 kb on + strand, within HEPCGN_01270 at 180.128 kb on - strand, within HEPCGN_01270 at 180.141 kb on - strand, within HEPCGN_01270 at 180.181 kb on + strand, within HEPCGN_01270 at 180.182 kb on - strand, within HEPCGN_01270 at 180.182 kb on - strand, within HEPCGN_01270 at 180.182 kb on - strand, within HEPCGN_01270
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 177,927 + +3.0 178,105 + HEPCGN_01260 0.26 +0.2 178,280 + HEPCGN_01260 0.44 -0.1 178,286 + HEPCGN_01260 0.44 +0.2 178,542 - HEPCGN_01260 0.71 -0.9 178,609 - HEPCGN_01260 0.78 +0.3 178,615 + HEPCGN_01260 0.78 +0.3 178,631 + HEPCGN_01260 0.80 +1.1 178,645 - HEPCGN_01260 0.81 +1.0 178,717 + HEPCGN_01260 0.89 -2.2 178,837 - -0.6 178,935 + HEPCGN_01265 0.17 -0.5 179,153 + HEPCGN_01265 0.61 -2.1 179,307 - +0.1 179,366 - -0.6 179,412 - -0.4 179,554 + HEPCGN_01270 0.16 -1.7 179,555 - HEPCGN_01270 0.16 +0.0 179,587 + HEPCGN_01270 0.18 -0.1 179,596 - HEPCGN_01270 0.19 +3.1 179,737 + HEPCGN_01270 0.30 -1.0 179,822 + HEPCGN_01270 0.36 -2.1 179,823 - HEPCGN_01270 0.36 +0.6 179,832 - HEPCGN_01270 0.37 -0.2 180,056 - HEPCGN_01270 0.54 +0.5 180,056 - HEPCGN_01270 0.54 -0.0 180,119 - HEPCGN_01270 0.59 -0.1 180,127 + HEPCGN_01270 0.60 -0.0 180,128 - HEPCGN_01270 0.60 -0.5 180,141 - HEPCGN_01270 0.61 -0.3 180,181 + HEPCGN_01270 0.64 +2.0 180,182 - HEPCGN_01270 0.64 -1.4 180,182 - HEPCGN_01270 0.64 -0.0 180,182 - HEPCGN_01270 0.64 -0.6
Or see this region's nucleotide sequence