Experiment: Bas07
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tyrP and yecH are separated by 190 nucleotides yecH and ftnA are separated by 37 nucleotides ftnA and yecR are separated by 171 nucleotides yecR and azuC are separated by 263 nucleotides azuC and yecJ are separated by 113 nucleotides
HEPCGN_04455: tyrP - tyrosine transporter TyrP, at 775,047 to 776,258
tyrP
HEPCGN_04460: yecH - Uncharacterized protein YecH, at 776,449 to 776,688
yecH
HEPCGN_04465: ftnA - non-heme ferritin, at 776,726 to 777,223
ftnA
HEPCGN_04470: yecR - Uncharacterized protein YecR, at 777,395 to 777,718
yecR
HEPCGN_04475: azuC - stress response protein AzuC, at 777,982 to 778,068
azuC
HEPCGN_04480: yecJ - Uncharacterized protein YecJ, at 778,182 to 778,433
yecJ
Position (kb) 776
777
778 Strain fitness (log2 ratio) -2
-1
0
1
2 at 775.774 kb on - strand, within tyrP at 775.774 kb on - strand, within tyrP at 775.914 kb on - strand, within tyrP at 775.967 kb on - strand, within tyrP at 775.985 kb on - strand, within tyrP at 775.985 kb on - strand, within tyrP at 776.001 kb on - strand, within tyrP at 776.101 kb on - strand, within tyrP at 776.283 kb on + strand at 776.297 kb on - strand at 776.358 kb on + strand at 776.408 kb on - strand at 776.427 kb on - strand at 776.458 kb on - strand at 776.481 kb on + strand, within yecH at 776.482 kb on - strand, within yecH at 776.508 kb on + strand, within yecH at 776.536 kb on - strand, within yecH at 776.728 kb on - strand at 776.802 kb on - strand, within ftnA at 776.856 kb on + strand, within ftnA at 777.046 kb on - strand, within ftnA at 777.126 kb on + strand, within ftnA at 777.127 kb on - strand, within ftnA at 777.243 kb on + strand at 777.302 kb on + strand at 777.461 kb on + strand, within yecR at 777.461 kb on + strand, within yecR at 777.462 kb on - strand, within yecR at 777.520 kb on + strand, within yecR at 777.606 kb on + strand, within yecR at 777.617 kb on - strand, within yecR at 777.622 kb on + strand, within yecR at 777.623 kb on - strand, within yecR at 777.623 kb on - strand, within yecR at 777.671 kb on - strand, within yecR at 777.671 kb on - strand, within yecR at 777.671 kb on - strand, within yecR at 777.882 kb on + strand at 777.882 kb on + strand at 777.892 kb on - strand at 777.900 kb on + strand at 777.901 kb on - strand at 777.932 kb on - strand at 777.960 kb on - strand at 778.017 kb on + strand, within azuC at 778.018 kb on - strand, within azuC at 778.021 kb on + strand, within azuC at 778.021 kb on + strand, within azuC at 778.148 kb on - strand at 778.149 kb on + strand at 778.179 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas07 remove 775,774 - tyrP HEPCGN_04455 0.60 +0.1 775,774 - tyrP HEPCGN_04455 0.60 -0.2 775,914 - tyrP HEPCGN_04455 0.72 -1.1 775,967 - tyrP HEPCGN_04455 0.76 -0.3 775,985 - tyrP HEPCGN_04455 0.77 +0.0 775,985 - tyrP HEPCGN_04455 0.77 -0.5 776,001 - tyrP HEPCGN_04455 0.79 -1.5 776,101 - tyrP HEPCGN_04455 0.87 -1.5 776,283 + -0.2 776,297 - +0.9 776,358 + -1.3 776,408 - +0.5 776,427 - -1.0 776,458 - +0.2 776,481 + yecH HEPCGN_04460 0.13 +0.6 776,482 - yecH HEPCGN_04460 0.14 -0.7 776,508 + yecH HEPCGN_04460 0.25 -0.1 776,536 - yecH HEPCGN_04460 0.36 +0.4 776,728 - +0.8 776,802 - ftnA HEPCGN_04465 0.15 -0.9 776,856 + ftnA HEPCGN_04465 0.26 -0.0 777,046 - ftnA HEPCGN_04465 0.64 -0.6 777,126 + ftnA HEPCGN_04465 0.80 -0.4 777,127 - ftnA HEPCGN_04465 0.81 -0.8 777,243 + +0.2 777,302 + +0.7 777,461 + yecR HEPCGN_04470 0.20 -0.4 777,461 + yecR HEPCGN_04470 0.20 -1.5 777,462 - yecR HEPCGN_04470 0.21 -1.4 777,520 + yecR HEPCGN_04470 0.39 -1.0 777,606 + yecR HEPCGN_04470 0.65 -0.1 777,617 - yecR HEPCGN_04470 0.69 -0.8 777,622 + yecR HEPCGN_04470 0.70 -0.5 777,623 - yecR HEPCGN_04470 0.70 -1.4 777,623 - yecR HEPCGN_04470 0.70 +0.3 777,671 - yecR HEPCGN_04470 0.85 +0.3 777,671 - yecR HEPCGN_04470 0.85 -0.6 777,671 - yecR HEPCGN_04470 0.85 -0.0 777,882 + +2.6 777,882 + -0.3 777,892 - +1.7 777,900 + -1.9 777,901 - +0.2 777,932 - -0.2 777,960 - +0.6 778,017 + azuC HEPCGN_04475 0.40 +0.4 778,018 - azuC HEPCGN_04475 0.41 +1.1 778,021 + azuC HEPCGN_04475 0.45 -0.3 778,021 + azuC HEPCGN_04475 0.45 +0.3 778,148 - -0.4 778,149 + -1.2 778,179 - +0.4
Or see this region's nucleotide sequence