Experiment: Bas07
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cobU and cobS overlap by 4 nucleotides cobS and cobT are separated by 11 nucleotides
HEPCGN_03460: cobU - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 597,476 to 598,018
cobU
HEPCGN_03465: cobS - adenosylcobinamide-GDP ribazoletransferase, at 598,015 to 598,758
cobS
HEPCGN_03470: cobT - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 598,770 to 599,849
cobT
Position (kb) 597
598
599 Strain fitness (log2 ratio) -2
-1
0
1
2 at 596.513 kb on + strand at 596.516 kb on - strand at 596.549 kb on + strand at 596.613 kb on + strand at 596.881 kb on + strand at 597.081 kb on - strand at 597.081 kb on - strand at 597.126 kb on - strand at 597.224 kb on + strand at 597.224 kb on + strand at 597.225 kb on - strand at 597.331 kb on - strand at 597.452 kb on - strand at 597.452 kb on - strand at 597.558 kb on - strand, within cobU at 597.558 kb on - strand, within cobU at 597.604 kb on - strand, within cobU at 597.722 kb on - strand, within cobU at 597.865 kb on - strand, within cobU at 597.978 kb on + strand at 597.979 kb on - strand at 598.021 kb on - strand at 598.047 kb on + strand at 598.117 kb on - strand, within cobS at 598.220 kb on + strand, within cobS at 598.286 kb on + strand, within cobS at 598.377 kb on - strand, within cobS at 598.486 kb on + strand, within cobS at 598.599 kb on - strand, within cobS at 598.609 kb on - strand, within cobS at 598.627 kb on - strand, within cobS at 598.627 kb on - strand, within cobS at 598.718 kb on + strand at 598.718 kb on + strand at 598.755 kb on - strand at 598.755 kb on - strand at 598.958 kb on - strand, within cobT
Per-strain Table
Position Strand Gene LocusTag Fraction Bas07 remove 596,513 + -2.3 596,516 - -0.4 596,549 + -1.9 596,613 + +0.2 596,881 + +0.2 597,081 - -0.1 597,081 - -0.2 597,126 - -1.1 597,224 + -0.4 597,224 + -0.3 597,225 - -0.9 597,331 - -0.0 597,452 - +1.1 597,452 - +0.6 597,558 - cobU HEPCGN_03460 0.15 +0.0 597,558 - cobU HEPCGN_03460 0.15 -0.2 597,604 - cobU HEPCGN_03460 0.24 +1.6 597,722 - cobU HEPCGN_03460 0.45 -0.8 597,865 - cobU HEPCGN_03460 0.72 -1.5 597,978 + -0.1 597,979 - +0.3 598,021 - -1.2 598,047 + -0.3 598,117 - cobS HEPCGN_03465 0.14 +0.6 598,220 + cobS HEPCGN_03465 0.28 -0.4 598,286 + cobS HEPCGN_03465 0.36 +0.2 598,377 - cobS HEPCGN_03465 0.49 -0.2 598,486 + cobS HEPCGN_03465 0.63 +0.4 598,599 - cobS HEPCGN_03465 0.78 -2.5 598,609 - cobS HEPCGN_03465 0.80 +0.7 598,627 - cobS HEPCGN_03465 0.82 -1.2 598,627 - cobS HEPCGN_03465 0.82 +2.0 598,718 + -0.5 598,718 + -0.5 598,755 - -0.6 598,755 - -0.4 598,958 - cobT HEPCGN_03470 0.17 -0.5
Or see this region's nucleotide sequence