Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03260

Experiment: Bas07

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntplaP and yeeE are separated by 232 nucleotidesyeeE and yeeD are separated by 13 nucleotidesyeeD and sbcB are separated by 42 nucleotides HEPCGN_03255: plaP - putrescine/proton symporter PlaP, at 560,579 to 561,937 plaP HEPCGN_03260: yeeE - transport protein YeeE, at 562,170 to 563,174 yeeE HEPCGN_03265: yeeD - Putative sulfur carrier protein YeeD, at 563,188 to 563,415 yeeD HEPCGN_03270: sbcB - exodeoxyribonuclease I, at 563,458 to 564,885 sbcB Position (kb) 562 563 564Strain fitness (log2 ratio) -2 -1 0 1 2 3at 561.339 kb on - strand, within plaPat 561.413 kb on + strand, within plaPat 561.515 kb on + strand, within plaPat 561.515 kb on + strand, within plaPat 561.516 kb on - strand, within plaPat 561.564 kb on + strand, within plaPat 561.564 kb on + strand, within plaPat 561.565 kb on - strand, within plaPat 561.595 kb on + strand, within plaPat 561.595 kb on + strand, within plaPat 561.921 kb on - strandat 561.973 kb on + strandat 562.017 kb on + strandat 562.020 kb on + strandat 562.092 kb on - strandat 562.115 kb on + strandat 562.215 kb on + strandat 562.216 kb on - strandat 562.216 kb on - strandat 562.315 kb on - strand, within yeeEat 562.351 kb on + strand, within yeeEat 562.351 kb on + strand, within yeeEat 562.351 kb on + strand, within yeeEat 562.461 kb on + strand, within yeeEat 562.461 kb on + strand, within yeeEat 562.461 kb on + strand, within yeeEat 562.463 kb on + strand, within yeeEat 562.464 kb on - strand, within yeeEat 562.528 kb on - strand, within yeeEat 562.541 kb on + strand, within yeeEat 562.541 kb on + strand, within yeeEat 562.548 kb on - strand, within yeeEat 562.730 kb on - strand, within yeeEat 562.785 kb on - strand, within yeeEat 562.855 kb on - strand, within yeeEat 562.859 kb on + strand, within yeeEat 562.963 kb on + strand, within yeeEat 562.963 kb on + strand, within yeeEat 562.964 kb on - strand, within yeeEat 562.964 kb on - strand, within yeeEat 563.087 kb on + strandat 563.173 kb on - strandat 563.176 kb on + strandat 563.177 kb on - strandat 563.240 kb on + strand, within yeeDat 563.241 kb on - strand, within yeeDat 563.288 kb on + strand, within yeeDat 563.289 kb on - strand, within yeeDat 563.525 kb on + strandat 563.558 kb on + strandat 563.624 kb on + strand, within sbcBat 563.624 kb on + strand, within sbcBat 563.719 kb on - strand, within sbcBat 563.784 kb on - strand, within sbcBat 563.784 kb on - strand, within sbcBat 563.784 kb on - strand, within sbcBat 563.802 kb on + strand, within sbcBat 563.947 kb on - strand, within sbcBat 563.974 kb on - strand, within sbcBat 563.974 kb on - strand, within sbcBat 564.036 kb on - strand, within sbcBat 564.037 kb on + strand, within sbcBat 564.105 kb on + strand, within sbcB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas07
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561,339 - plaP HEPCGN_03255 0.56 +1.9
561,413 + plaP HEPCGN_03255 0.61 -0.5
561,515 + plaP HEPCGN_03255 0.69 -0.5
561,515 + plaP HEPCGN_03255 0.69 +0.8
561,516 - plaP HEPCGN_03255 0.69 -1.6
561,564 + plaP HEPCGN_03255 0.72 -0.3
561,564 + plaP HEPCGN_03255 0.72 +1.0
561,565 - plaP HEPCGN_03255 0.73 +0.0
561,595 + plaP HEPCGN_03255 0.75 +0.2
561,595 + plaP HEPCGN_03255 0.75 +0.2
561,921 - -0.2
561,973 + -0.1
562,017 + +0.9
562,020 + +0.5
562,092 - +0.2
562,115 + -0.1
562,215 + -1.9
562,216 - -1.6
562,216 - +0.2
562,315 - yeeE HEPCGN_03260 0.14 -0.4
562,351 + yeeE HEPCGN_03260 0.18 -0.7
562,351 + yeeE HEPCGN_03260 0.18 +0.8
562,351 + yeeE HEPCGN_03260 0.18 +0.4
562,461 + yeeE HEPCGN_03260 0.29 -0.7
562,461 + yeeE HEPCGN_03260 0.29 +2.3
562,461 + yeeE HEPCGN_03260 0.29 -0.7
562,463 + yeeE HEPCGN_03260 0.29 -0.3
562,464 - yeeE HEPCGN_03260 0.29 -1.0
562,528 - yeeE HEPCGN_03260 0.36 -1.1
562,541 + yeeE HEPCGN_03260 0.37 +0.6
562,541 + yeeE HEPCGN_03260 0.37 +3.3
562,548 - yeeE HEPCGN_03260 0.38 -0.9
562,730 - yeeE HEPCGN_03260 0.56 +0.7
562,785 - yeeE HEPCGN_03260 0.61 -0.4
562,855 - yeeE HEPCGN_03260 0.68 -1.1
562,859 + yeeE HEPCGN_03260 0.69 +0.2
562,963 + yeeE HEPCGN_03260 0.79 -0.5
562,963 + yeeE HEPCGN_03260 0.79 -2.3
562,964 - yeeE HEPCGN_03260 0.79 +1.1
562,964 - yeeE HEPCGN_03260 0.79 +0.2
563,087 + +0.9
563,173 - -0.6
563,176 + -0.0
563,177 - -0.0
563,240 + yeeD HEPCGN_03265 0.23 -2.2
563,241 - yeeD HEPCGN_03265 0.23 +0.1
563,288 + yeeD HEPCGN_03265 0.44 -0.2
563,289 - yeeD HEPCGN_03265 0.44 +0.3
563,525 + -1.0
563,558 + +2.1
563,624 + sbcB HEPCGN_03270 0.12 +0.9
563,624 + sbcB HEPCGN_03270 0.12 +0.5
563,719 - sbcB HEPCGN_03270 0.18 -0.2
563,784 - sbcB HEPCGN_03270 0.23 +0.2
563,784 - sbcB HEPCGN_03270 0.23 -0.0
563,784 - sbcB HEPCGN_03270 0.23 -0.2
563,802 + sbcB HEPCGN_03270 0.24 +1.0
563,947 - sbcB HEPCGN_03270 0.34 +0.6
563,974 - sbcB HEPCGN_03270 0.36 +1.1
563,974 - sbcB HEPCGN_03270 0.36 -0.1
564,036 - sbcB HEPCGN_03270 0.40 -0.2
564,037 + sbcB HEPCGN_03270 0.41 +0.7
564,105 + sbcB HEPCGN_03270 0.45 +1.0

Or see this region's nucleotide sequence