Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gpI and HEPCGN_26730 overlap by 8 nucleotides HEPCGN_26730 and HEPCGN_26735 overlap by 14 nucleotides HEPCGN_26735 and gpV overlap by 4 nucleotides gpV and HEPCGN_26745 are separated by 68 nucleotides
HEPCGN_26725: gpI - phage tail protein I, at 4,099,554 to 4,100,159
gpI
HEPCGN_26730: HEPCGN_26730 - baseplate assembly protein, at 4,100,152 to 4,101,060
_26730
HEPCGN_26735: HEPCGN_26735 - baseplate assembly protein, at 4,101,047 to 4,101,406
_26735
HEPCGN_26740: gpV - phage baseplate assembly protein V, at 4,101,403 to 4,101,981
gpV
HEPCGN_26745: HEPCGN_26745 - phage virion morphogenesis protein, at 4,102,050 to 4,102,496
_26745
Position (kb) 4101
4102 Strain fitness (log2 ratio) -1
0
1 at 4100.153 kb on + strand at 4100.154 kb on - strand at 4100.190 kb on + strand at 4100.190 kb on + strand at 4100.191 kb on - strand at 4100.541 kb on + strand, within HEPCGN_26730 at 4100.775 kb on - strand, within HEPCGN_26730 at 4100.874 kb on - strand, within HEPCGN_26730 at 4101.207 kb on + strand, within HEPCGN_26735 at 4101.207 kb on + strand, within HEPCGN_26735 at 4101.207 kb on + strand, within HEPCGN_26735 at 4101.208 kb on - strand, within HEPCGN_26735 at 4101.355 kb on + strand, within HEPCGN_26735 at 4101.447 kb on + strand at 4101.448 kb on - strand at 4101.477 kb on + strand, within gpV at 4101.732 kb on - strand, within gpV at 4101.819 kb on + strand, within gpV at 4101.819 kb on + strand, within gpV at 4101.820 kb on - strand, within gpV at 4101.923 kb on - strand, within gpV at 4101.968 kb on - strand at 4102.031 kb on - strand at 4102.151 kb on + strand, within HEPCGN_26745 at 4102.373 kb on + strand, within HEPCGN_26745
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 4,100,153 + -0.2 4,100,154 - +1.1 4,100,190 + +0.2 4,100,190 + -0.3 4,100,191 - -0.3 4,100,541 + HEPCGN_26730 0.43 +0.2 4,100,775 - HEPCGN_26730 0.69 -0.2 4,100,874 - HEPCGN_26730 0.79 +0.7 4,101,207 + HEPCGN_26735 0.44 +1.1 4,101,207 + HEPCGN_26735 0.44 -1.2 4,101,207 + HEPCGN_26735 0.44 +1.7 4,101,208 - HEPCGN_26735 0.45 +0.8 4,101,355 + HEPCGN_26735 0.86 -0.4 4,101,447 + -0.3 4,101,448 - -0.5 4,101,477 + gpV HEPCGN_26740 0.13 +1.6 4,101,732 - gpV HEPCGN_26740 0.57 -1.6 4,101,819 + gpV HEPCGN_26740 0.72 -0.2 4,101,819 + gpV HEPCGN_26740 0.72 +0.4 4,101,820 - gpV HEPCGN_26740 0.72 +0.3 4,101,923 - gpV HEPCGN_26740 0.90 +0.6 4,101,968 - -0.5 4,102,031 - +0.8 4,102,151 + HEPCGN_26745 0.23 +1.2 4,102,373 + HEPCGN_26745 0.72 +0.7
Or see this region's nucleotide sequence