Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt epmA and frdA are separated by 324 nucleotides frdA and frdB overlap by 8 nucleotides frdB and HEPCGN_10580 are separated by 10 nucleotides
HEPCGN_10565: epmA - elongation factor P--(R)-beta-lysine ligase, at 855,886 to 856,863
epmA
HEPCGN_10570: frdA - fumarate reductase (quinol) flavoprotein subunit, at 857,188 to 858,996
frdA
HEPCGN_10575: frdB - fumarate reductase iron-sulfur protein, at 858,989 to 859,723
frdB
HEPCGN_10580: HEPCGN_10580 - Fumarate reductase subunit C, at 859,734 to 860,129
_10580
Position (kb) 857
858
859 Strain fitness (log2 ratio) -2
-1
0
1
2 at 856.255 kb on - strand, within epmA at 856.289 kb on - strand, within epmA at 856.419 kb on - strand, within epmA at 856.491 kb on - strand, within epmA at 856.524 kb on + strand, within epmA at 856.525 kb on - strand, within epmA at 856.737 kb on + strand, within epmA at 856.813 kb on + strand at 856.814 kb on - strand at 856.817 kb on - strand at 856.817 kb on - strand at 856.821 kb on + strand at 856.822 kb on - strand at 856.863 kb on + strand at 856.863 kb on + strand at 856.864 kb on - strand at 856.961 kb on + strand at 857.019 kb on - strand at 857.077 kb on + strand at 857.078 kb on - strand at 857.078 kb on - strand at 857.078 kb on - strand at 857.079 kb on + strand at 857.087 kb on + strand at 857.088 kb on - strand at 857.088 kb on - strand at 857.091 kb on + strand at 857.091 kb on + strand at 857.092 kb on - strand at 857.092 kb on - strand at 857.092 kb on - strand at 857.094 kb on - strand at 857.094 kb on - strand at 857.109 kb on + strand at 857.140 kb on + strand at 857.141 kb on - strand at 857.151 kb on - strand at 857.219 kb on + strand at 857.219 kb on + strand at 857.241 kb on - strand at 857.304 kb on - strand at 857.304 kb on - strand at 857.381 kb on - strand, within frdA at 857.528 kb on + strand, within frdA at 857.529 kb on - strand, within frdA at 857.529 kb on - strand, within frdA at 857.592 kb on + strand, within frdA at 857.791 kb on + strand, within frdA at 857.791 kb on + strand, within frdA at 857.791 kb on + strand, within frdA at 857.792 kb on - strand, within frdA at 858.033 kb on + strand, within frdA at 858.127 kb on + strand, within frdA at 858.202 kb on + strand, within frdA at 858.202 kb on + strand, within frdA at 858.202 kb on + strand, within frdA at 858.203 kb on - strand, within frdA at 858.203 kb on - strand, within frdA at 858.256 kb on + strand, within frdA at 858.256 kb on + strand, within frdA at 858.256 kb on + strand, within frdA at 858.256 kb on + strand, within frdA at 858.257 kb on - strand, within frdA at 858.257 kb on - strand, within frdA at 858.257 kb on - strand, within frdA at 858.420 kb on + strand, within frdA at 858.586 kb on + strand, within frdA at 858.591 kb on + strand, within frdA at 858.741 kb on + strand, within frdA at 858.742 kb on - strand, within frdA at 858.765 kb on + strand, within frdA at 858.765 kb on + strand, within frdA at 858.900 kb on + strand at 858.900 kb on + strand at 858.903 kb on + strand at 858.918 kb on + strand at 858.954 kb on + strand at 858.973 kb on - strand at 859.058 kb on - strand at 859.067 kb on + strand, within frdB at 859.068 kb on - strand, within frdB at 859.068 kb on - strand, within frdB at 859.098 kb on + strand, within frdB at 859.116 kb on - strand, within frdB at 859.222 kb on + strand, within frdB at 859.242 kb on - strand, within frdB at 859.269 kb on + strand, within frdB at 859.269 kb on + strand, within frdB at 859.273 kb on + strand, within frdB at 859.384 kb on + strand, within frdB at 859.384 kb on + strand, within frdB at 859.385 kb on - strand, within frdB at 859.416 kb on - strand, within frdB at 859.454 kb on + strand, within frdB at 859.510 kb on + strand, within frdB at 859.527 kb on - strand, within frdB at 859.603 kb on + strand, within frdB at 859.603 kb on + strand, within frdB at 859.677 kb on + strand at 859.748 kb on + strand at 859.755 kb on + strand at 859.755 kb on + strand at 859.755 kb on + strand at 859.755 kb on + strand at 859.756 kb on - strand at 859.756 kb on - strand at 859.759 kb on + strand at 859.759 kb on + strand at 859.759 kb on + strand at 859.759 kb on + strand at 859.759 kb on + strand at 859.809 kb on + strand, within HEPCGN_10580
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 856,255 - epmA HEPCGN_10565 0.38 -1.1 856,289 - epmA HEPCGN_10565 0.41 -0.4 856,419 - epmA HEPCGN_10565 0.54 -1.0 856,491 - epmA HEPCGN_10565 0.62 -1.5 856,524 + epmA HEPCGN_10565 0.65 -0.2 856,525 - epmA HEPCGN_10565 0.65 -0.3 856,737 + epmA HEPCGN_10565 0.87 -0.5 856,813 + +2.5 856,814 - +0.8 856,817 - -0.5 856,817 - -2.3 856,821 + -0.7 856,822 - +0.4 856,863 + -0.6 856,863 + -2.0 856,864 - -1.1 856,961 + +0.1 857,019 - +0.3 857,077 + -0.5 857,078 - -0.6 857,078 - -1.0 857,078 - +0.0 857,079 + +0.5 857,087 + +0.4 857,088 - -1.2 857,088 - +0.1 857,091 + +0.6 857,091 + -0.3 857,092 - -0.6 857,092 - +0.2 857,092 - -1.2 857,094 - +1.4 857,094 - +0.5 857,109 + -0.1 857,140 + -1.1 857,141 - -0.2 857,151 - -0.7 857,219 + +1.0 857,219 + -0.4 857,241 - -0.2 857,304 - -0.6 857,304 - +0.5 857,381 - frdA HEPCGN_10570 0.11 +1.9 857,528 + frdA HEPCGN_10570 0.19 +0.2 857,529 - frdA HEPCGN_10570 0.19 -0.4 857,529 - frdA HEPCGN_10570 0.19 -0.2 857,592 + frdA HEPCGN_10570 0.22 +0.2 857,791 + frdA HEPCGN_10570 0.33 -0.3 857,791 + frdA HEPCGN_10570 0.33 +1.1 857,791 + frdA HEPCGN_10570 0.33 +0.5 857,792 - frdA HEPCGN_10570 0.33 +0.5 858,033 + frdA HEPCGN_10570 0.47 +0.8 858,127 + frdA HEPCGN_10570 0.52 +1.4 858,202 + frdA HEPCGN_10570 0.56 -0.6 858,202 + frdA HEPCGN_10570 0.56 -0.7 858,202 + frdA HEPCGN_10570 0.56 -0.0 858,203 - frdA HEPCGN_10570 0.56 -0.2 858,203 - frdA HEPCGN_10570 0.56 +0.1 858,256 + frdA HEPCGN_10570 0.59 +2.2 858,256 + frdA HEPCGN_10570 0.59 -0.6 858,256 + frdA HEPCGN_10570 0.59 +0.4 858,256 + frdA HEPCGN_10570 0.59 -0.4 858,257 - frdA HEPCGN_10570 0.59 -0.4 858,257 - frdA HEPCGN_10570 0.59 +0.3 858,257 - frdA HEPCGN_10570 0.59 +0.1 858,420 + frdA HEPCGN_10570 0.68 +0.9 858,586 + frdA HEPCGN_10570 0.77 -1.1 858,591 + frdA HEPCGN_10570 0.78 -2.7 858,741 + frdA HEPCGN_10570 0.86 +0.3 858,742 - frdA HEPCGN_10570 0.86 +1.6 858,765 + frdA HEPCGN_10570 0.87 -0.5 858,765 + frdA HEPCGN_10570 0.87 +0.1 858,900 + +0.7 858,900 + +0.7 858,903 + +0.3 858,918 + -0.2 858,954 + -0.6 858,973 - +0.7 859,058 - +0.1 859,067 + frdB HEPCGN_10575 0.11 +1.2 859,068 - frdB HEPCGN_10575 0.11 -0.6 859,068 - frdB HEPCGN_10575 0.11 -1.7 859,098 + frdB HEPCGN_10575 0.15 +0.0 859,116 - frdB HEPCGN_10575 0.17 +1.4 859,222 + frdB HEPCGN_10575 0.32 -1.7 859,242 - frdB HEPCGN_10575 0.34 +0.5 859,269 + frdB HEPCGN_10575 0.38 +0.3 859,269 + frdB HEPCGN_10575 0.38 -1.6 859,273 + frdB HEPCGN_10575 0.39 +1.0 859,384 + frdB HEPCGN_10575 0.54 +0.8 859,384 + frdB HEPCGN_10575 0.54 +0.2 859,385 - frdB HEPCGN_10575 0.54 +0.3 859,416 - frdB HEPCGN_10575 0.58 -0.4 859,454 + frdB HEPCGN_10575 0.63 -0.2 859,510 + frdB HEPCGN_10575 0.71 -0.9 859,527 - frdB HEPCGN_10575 0.73 -0.4 859,603 + frdB HEPCGN_10575 0.84 -0.5 859,603 + frdB HEPCGN_10575 0.84 -0.6 859,677 + -0.6 859,748 + +0.6 859,755 + -0.3 859,755 + +0.3 859,755 + +0.8 859,755 + +1.1 859,756 - -0.0 859,756 - +0.8 859,759 + +0.5 859,759 + -0.4 859,759 + -1.1 859,759 + -0.4 859,759 + +0.5 859,809 + HEPCGN_10580 0.19 +0.1
Or see this region's nucleotide sequence