Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09920 and intB are separated by 525 nucleotides
HEPCGN_09920: HEPCGN_09920 - Putative sulfatase, at 729,458 to 729,790
_09920
HEPCGN_09925: intB - Putative protein IntB, at 730,316 to 731,581
intB
Position (kb) 729
730 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 728.476 kb on - strand at 728.480 kb on - strand at 728.508 kb on + strand at 728.579 kb on - strand at 728.654 kb on + strand at 728.985 kb on - strand at 728.985 kb on - strand at 728.985 kb on - strand at 729.109 kb on + strand at 729.304 kb on + strand at 729.305 kb on - strand at 729.305 kb on - strand at 729.316 kb on + strand at 729.317 kb on - strand at 729.323 kb on + strand at 729.324 kb on - strand at 729.324 kb on - strand at 729.364 kb on + strand at 729.364 kb on + strand at 729.365 kb on - strand at 729.430 kb on + strand at 729.594 kb on + strand, within HEPCGN_09920 at 729.595 kb on - strand, within HEPCGN_09920 at 729.595 kb on - strand, within HEPCGN_09920 at 729.651 kb on + strand, within HEPCGN_09920 at 729.651 kb on + strand, within HEPCGN_09920 at 729.726 kb on + strand, within HEPCGN_09920 at 729.727 kb on - strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.734 kb on - strand, within HEPCGN_09920 at 729.775 kb on + strand at 729.775 kb on + strand at 729.776 kb on - strand at 729.788 kb on + strand at 729.788 kb on + strand at 729.789 kb on - strand at 729.789 kb on - strand at 730.347 kb on + strand at 730.348 kb on - strand at 730.406 kb on + strand at 730.449 kb on + strand, within intB at 730.449 kb on + strand, within intB at 730.449 kb on + strand, within intB at 730.538 kb on - strand, within intB at 730.588 kb on - strand, within intB at 730.614 kb on - strand, within intB at 730.614 kb on - strand, within intB at 730.614 kb on - strand, within intB at 730.661 kb on + strand, within intB at 730.662 kb on - strand, within intB at 730.733 kb on + strand, within intB at 730.733 kb on + strand, within intB at 730.734 kb on - strand, within intB at 730.787 kb on - strand, within intB
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 728,476 - +0.2 728,480 - -0.3 728,508 + +0.8 728,579 - -0.2 728,654 + +3.0 728,985 - -0.2 728,985 - -0.0 728,985 - -0.5 729,109 + -0.4 729,304 + +0.7 729,305 - +3.0 729,305 - -0.2 729,316 + +1.2 729,317 - +0.0 729,323 + +0.5 729,324 - +0.2 729,324 - -0.3 729,364 + +0.1 729,364 + -1.5 729,365 - -0.1 729,430 + -0.1 729,594 + HEPCGN_09920 0.41 -0.1 729,595 - HEPCGN_09920 0.41 +0.4 729,595 - HEPCGN_09920 0.41 -0.5 729,651 + HEPCGN_09920 0.58 +0.1 729,651 + HEPCGN_09920 0.58 +0.8 729,726 + HEPCGN_09920 0.80 +1.0 729,727 - HEPCGN_09920 0.81 -0.1 729,728 + HEPCGN_09920 0.81 +0.3 729,728 + HEPCGN_09920 0.81 +0.1 729,728 + HEPCGN_09920 0.81 -1.1 729,728 + HEPCGN_09920 0.81 -0.3 729,734 - HEPCGN_09920 0.83 -0.9 729,775 + -0.6 729,775 + -0.0 729,776 - -0.5 729,788 + +1.8 729,788 + +0.6 729,789 - -0.9 729,789 - +0.2 730,347 + -0.3 730,348 - -0.2 730,406 + +0.1 730,449 + intB HEPCGN_09925 0.11 -0.3 730,449 + intB HEPCGN_09925 0.11 -0.0 730,449 + intB HEPCGN_09925 0.11 -2.2 730,538 - intB HEPCGN_09925 0.18 +0.9 730,588 - intB HEPCGN_09925 0.21 +0.3 730,614 - intB HEPCGN_09925 0.24 +0.4 730,614 - intB HEPCGN_09925 0.24 +0.1 730,614 - intB HEPCGN_09925 0.24 +0.3 730,661 + intB HEPCGN_09925 0.27 -0.0 730,662 - intB HEPCGN_09925 0.27 -0.4 730,733 + intB HEPCGN_09925 0.33 +0.2 730,733 + intB HEPCGN_09925 0.33 +1.6 730,734 - intB HEPCGN_09925 0.33 +0.2 730,787 - intB HEPCGN_09925 0.37 -2.0
Or see this region's nucleotide sequence