Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03685 and HEPCGN_03690 are separated by 314 nucleotides HEPCGN_03690 and HEPCGN_03695 are separated by 12 nucleotides HEPCGN_03695 and HEPCGN_03705 are separated by 685 nucleotides
HEPCGN_03685: HEPCGN_03685 - SMEK domain-containing protein, at 654,699 to 655,598
_03685
HEPCGN_03690: HEPCGN_03690 - Tellurite resistance protein TehB, at 655,913 to 656,566
_03690
HEPCGN_03695: HEPCGN_03695 - Uncharacterized protein YmfE, at 656,579 to 657,274
_03695
HEPCGN_03705: HEPCGN_03705 - protein hokC, at 657,960 to 658,172
_03705
Position (kb) 656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 655.718 kb on + strand at 655.721 kb on + strand at 655.722 kb on - strand at 655.725 kb on + strand at 655.739 kb on - strand at 655.743 kb on + strand at 655.764 kb on - strand at 656.006 kb on - strand, within HEPCGN_03690 at 656.037 kb on + strand, within HEPCGN_03690 at 657.035 kb on + strand, within HEPCGN_03695 at 657.142 kb on - strand, within HEPCGN_03695 at 657.537 kb on + strand at 657.537 kb on + strand at 657.538 kb on - strand at 657.538 kb on - strand at 657.648 kb on + strand at 657.753 kb on + strand at 657.785 kb on - strand at 657.832 kb on + strand at 657.837 kb on - strand at 657.910 kb on + strand at 657.936 kb on + strand at 657.959 kb on + strand at 657.960 kb on - strand at 657.960 kb on - strand at 657.960 kb on - strand at 657.966 kb on + strand at 657.975 kb on - strand at 657.988 kb on - strand, within HEPCGN_03705
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 655,718 + +0.7 655,721 + -2.1 655,722 - +1.4 655,725 + +1.4 655,739 - -2.9 655,743 + -0.7 655,764 - -2.1 656,006 - HEPCGN_03690 0.14 -1.3 656,037 + HEPCGN_03690 0.19 -1.5 657,035 + HEPCGN_03695 0.66 -3.7 657,142 - HEPCGN_03695 0.81 -1.2 657,537 + +0.5 657,537 + +1.8 657,538 - +0.3 657,538 - +1.7 657,648 + -0.3 657,753 + -0.2 657,785 - +0.4 657,832 + -0.2 657,837 - +0.0 657,910 + -1.1 657,936 + -1.7 657,959 + -0.7 657,960 - +0.2 657,960 - -1.8 657,960 - -1.5 657,966 + -0.7 657,975 - -0.2 657,988 - HEPCGN_03705 0.13 -0.1
Or see this region's nucleotide sequence