Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ftrA and mgtS are separated by 107 nucleotides mgtS and dgcZ are separated by 218 nucleotides
HEPCGN_26900: ftrA - transcriptional regulator FtrA, at 4,125,446 to 4,126,438
ftrA
HEPCGN_26905: mgtS - protein MgtS, at 4,126,546 to 4,126,641
mgtS
HEPCGN_26915: dgcZ - diguanylate cyclase DgcZ, at 4,126,860 to 4,127,750
dgcZ
Position (kb) 4126
4127 Strain fitness (log2 ratio) -2
-1
0
1 at 4125.581 kb on - strand, within ftrA at 4125.581 kb on - strand, within ftrA at 4125.676 kb on + strand, within ftrA at 4125.677 kb on - strand, within ftrA at 4125.695 kb on - strand, within ftrA at 4125.717 kb on + strand, within ftrA at 4125.741 kb on + strand, within ftrA at 4125.741 kb on + strand, within ftrA at 4125.742 kb on - strand, within ftrA at 4125.842 kb on - strand, within ftrA at 4125.863 kb on + strand, within ftrA at 4125.863 kb on + strand, within ftrA at 4125.895 kb on + strand, within ftrA at 4125.895 kb on + strand, within ftrA at 4125.896 kb on - strand, within ftrA at 4125.903 kb on + strand, within ftrA at 4125.918 kb on + strand, within ftrA at 4125.919 kb on - strand, within ftrA at 4125.981 kb on + strand, within ftrA at 4125.981 kb on + strand, within ftrA at 4125.981 kb on + strand, within ftrA at 4125.982 kb on - strand, within ftrA at 4125.985 kb on + strand, within ftrA at 4125.986 kb on - strand, within ftrA at 4125.986 kb on - strand, within ftrA at 4125.986 kb on - strand, within ftrA at 4126.359 kb on + strand at 4126.360 kb on - strand at 4126.362 kb on + strand at 4126.465 kb on + strand at 4126.557 kb on + strand, within mgtS at 4126.652 kb on + strand at 4126.679 kb on + strand at 4126.826 kb on - strand at 4126.893 kb on - strand at 4126.898 kb on + strand at 4126.898 kb on + strand at 4126.899 kb on - strand at 4126.899 kb on - strand at 4126.930 kb on + strand at 4126.931 kb on - strand at 4126.931 kb on - strand at 4127.175 kb on + strand, within dgcZ at 4127.180 kb on - strand, within dgcZ at 4127.180 kb on - strand, within dgcZ at 4127.269 kb on - strand, within dgcZ at 4127.367 kb on - strand, within dgcZ at 4127.474 kb on + strand, within dgcZ at 4127.501 kb on + strand, within dgcZ at 4127.501 kb on + strand, within dgcZ at 4127.501 kb on + strand, within dgcZ at 4127.501 kb on + strand, within dgcZ at 4127.501 kb on + strand, within dgcZ at 4127.507 kb on + strand, within dgcZ at 4127.508 kb on - strand, within dgcZ at 4127.508 kb on - strand, within dgcZ at 4127.540 kb on - strand, within dgcZ at 4127.544 kb on + strand, within dgcZ
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 4,125,581 - ftrA HEPCGN_26900 0.14 +0.3 4,125,581 - ftrA HEPCGN_26900 0.14 -0.0 4,125,676 + ftrA HEPCGN_26900 0.23 +0.1 4,125,677 - ftrA HEPCGN_26900 0.23 +0.9 4,125,695 - ftrA HEPCGN_26900 0.25 -1.1 4,125,717 + ftrA HEPCGN_26900 0.27 +0.5 4,125,741 + ftrA HEPCGN_26900 0.30 -2.2 4,125,741 + ftrA HEPCGN_26900 0.30 -1.5 4,125,742 - ftrA HEPCGN_26900 0.30 -0.1 4,125,842 - ftrA HEPCGN_26900 0.40 +0.1 4,125,863 + ftrA HEPCGN_26900 0.42 -0.7 4,125,863 + ftrA HEPCGN_26900 0.42 +0.3 4,125,895 + ftrA HEPCGN_26900 0.45 +1.0 4,125,895 + ftrA HEPCGN_26900 0.45 -0.6 4,125,896 - ftrA HEPCGN_26900 0.45 +0.2 4,125,903 + ftrA HEPCGN_26900 0.46 -0.8 4,125,918 + ftrA HEPCGN_26900 0.48 +0.1 4,125,919 - ftrA HEPCGN_26900 0.48 +0.5 4,125,981 + ftrA HEPCGN_26900 0.54 +0.0 4,125,981 + ftrA HEPCGN_26900 0.54 -1.5 4,125,981 + ftrA HEPCGN_26900 0.54 +0.7 4,125,982 - ftrA HEPCGN_26900 0.54 -0.2 4,125,985 + ftrA HEPCGN_26900 0.54 +0.2 4,125,986 - ftrA HEPCGN_26900 0.54 -0.2 4,125,986 - ftrA HEPCGN_26900 0.54 -0.1 4,125,986 - ftrA HEPCGN_26900 0.54 +0.1 4,126,359 + -0.1 4,126,360 - -1.2 4,126,362 + +0.8 4,126,465 + +0.1 4,126,557 + mgtS HEPCGN_26905 0.11 -0.6 4,126,652 + +0.2 4,126,679 + +1.3 4,126,826 - +0.6 4,126,893 - +0.3 4,126,898 + +0.4 4,126,898 + +1.6 4,126,899 - -0.6 4,126,899 - -0.1 4,126,930 + -1.6 4,126,931 - -0.1 4,126,931 - -0.3 4,127,175 + dgcZ HEPCGN_26915 0.35 +0.1 4,127,180 - dgcZ HEPCGN_26915 0.36 +0.8 4,127,180 - dgcZ HEPCGN_26915 0.36 -1.6 4,127,269 - dgcZ HEPCGN_26915 0.46 -0.2 4,127,367 - dgcZ HEPCGN_26915 0.57 -0.9 4,127,474 + dgcZ HEPCGN_26915 0.69 -1.5 4,127,501 + dgcZ HEPCGN_26915 0.72 +0.7 4,127,501 + dgcZ HEPCGN_26915 0.72 -0.3 4,127,501 + dgcZ HEPCGN_26915 0.72 -1.7 4,127,501 + dgcZ HEPCGN_26915 0.72 +1.4 4,127,501 + dgcZ HEPCGN_26915 0.72 +0.7 4,127,507 + dgcZ HEPCGN_26915 0.73 +0.5 4,127,508 - dgcZ HEPCGN_26915 0.73 +0.8 4,127,508 - dgcZ HEPCGN_26915 0.73 +0.9 4,127,540 - dgcZ HEPCGN_26915 0.76 +0.0 4,127,544 + dgcZ HEPCGN_26915 0.77 -0.2
Or see this region's nucleotide sequence