Strain Fitness in Escherichia coli ECOR38 around HEPCGN_26880

Experiment: TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_26870 and HEPCGN_26875 are separated by 113 nucleotidesHEPCGN_26875 and HEPCGN_26880 are separated by 198 nucleotidesHEPCGN_26880 and eamA are separated by 44 nucleotides HEPCGN_26870: HEPCGN_26870 - PTS cellobiose transporter subunit IIC, at 4,119,972 to 4,121,294 _26870 HEPCGN_26875: HEPCGN_26875 - PTS sugar transporter subunit IIB, at 4,121,408 to 4,121,719 _26875 HEPCGN_26880: HEPCGN_26880 - GntR family transcriptional regulator, at 4,121,918 to 4,122,616 _26880 HEPCGN_26885: eamA - O-acetylserine/cysteine exporter, at 4,122,661 to 4,123,560 eamA Position (kb) 4121 4122 4123Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4121.703 kb on - strandat 4121.781 kb on + strandat 4122.278 kb on + strand, within HEPCGN_26880at 4122.282 kb on + strand, within HEPCGN_26880at 4122.539 kb on - strand, within HEPCGN_26880at 4122.704 kb on - strandat 4122.704 kb on - strandat 4122.714 kb on - strandat 4122.803 kb on - strand, within eamAat 4122.815 kb on - strand, within eamAat 4122.905 kb on + strand, within eamAat 4123.101 kb on + strand, within eamAat 4123.101 kb on + strand, within eamAat 4123.125 kb on + strand, within eamAat 4123.126 kb on - strand, within eamAat 4123.126 kb on - strand, within eamAat 4123.126 kb on - strand, within eamAat 4123.162 kb on - strand, within eamAat 4123.162 kb on - strand, within eamAat 4123.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP12
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4,121,703 - +1.7
4,121,781 + -1.3
4,122,278 + HEPCGN_26880 0.52 -0.6
4,122,282 + HEPCGN_26880 0.52 -1.8
4,122,539 - HEPCGN_26880 0.89 +0.8
4,122,704 - -0.6
4,122,704 - -1.6
4,122,714 - -0.5
4,122,803 - eamA HEPCGN_26885 0.16 +0.2
4,122,815 - eamA HEPCGN_26885 0.17 +1.5
4,122,905 + eamA HEPCGN_26885 0.27 +0.6
4,123,101 + eamA HEPCGN_26885 0.49 -0.8
4,123,101 + eamA HEPCGN_26885 0.49 +2.8
4,123,125 + eamA HEPCGN_26885 0.52 -0.5
4,123,126 - eamA HEPCGN_26885 0.52 +1.5
4,123,126 - eamA HEPCGN_26885 0.52 -0.4
4,123,126 - eamA HEPCGN_26885 0.52 -1.4
4,123,162 - eamA HEPCGN_26885 0.56 +0.1
4,123,162 - eamA HEPCGN_26885 0.56 +2.2
4,123,526 - -0.5

Or see this region's nucleotide sequence