Strain Fitness in Escherichia coli ECOR38 around HEPCGN_26260

Experiment: TP12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP12
3,997,955	+	patD	HEPCGN_26255	0.57	-0.0
3,998,013	-	patD	HEPCGN_26255	0.62	+0.1
3,998,208	-	patD	HEPCGN_26255	0.75	+0.4
3,998,211	-	patD	HEPCGN_26255	0.75	-1.7
3,998,211	-	patD	HEPCGN_26255	0.75	-1.1
3,998,211	-	patD	HEPCGN_26255	0.75	-1.3
3,998,211	-	patD	HEPCGN_26255	0.75	+0.1
3,998,213	+	patD	HEPCGN_26255	0.76	-0.8
3,998,422	+				+0.5
3,998,423	-				+0.0
3,998,451	+				+0.0
3,998,579	+				-1.5
3,998,580	-				-0.2
3,998,585	+				+1.3
3,998,663	-				-0.4
3,998,663	-				+0.0
3,998,686	+				+1.0
3,998,686	+				+1.2
3,998,687	-				-0.2
3,998,692	+				+2.2
3,998,720	+				+0.2
3,998,727	-				-0.4
3,998,766	+				-0.6
3,998,784	+				+0.7
3,998,784	+				+0.6
3,998,784	+				-2.1
3,998,787	-				-0.1
3,998,789	+				+1.2
3,998,812	-				+0.5
3,998,812	-				+0.2
3,998,923	-				-0.5
3,999,050	+	ortT	HEPCGN_26260	0.59	-0.7
3,999,157	-				-0.6
3,999,158	+				+0.9
3,999,159	-				-0.7
3,999,205	+				-1.2
3,999,329	+		HEPCGN_26265	0.53	+0.1
3,999,332	-		HEPCGN_26265	0.54	-0.5
3,999,382	+		HEPCGN_26265	0.75	+0.0
3,999,414	+		HEPCGN_26265	0.89	-2.1
3,999,518	+	ydcZ	HEPCGN_26270	0.17	+0.7
3,999,593	-	ydcZ	HEPCGN_26270	0.34	+0.1
3,999,593	-	ydcZ	HEPCGN_26270	0.34	+0.7
3,999,593	-	ydcZ	HEPCGN_26270	0.34	-2.0
3,999,665	+	ydcZ	HEPCGN_26270	0.50	-0.3
3,999,665	+	ydcZ	HEPCGN_26270	0.50	+0.7
3,999,666	-	ydcZ	HEPCGN_26270	0.50	-0.4
3,999,666	-	ydcZ	HEPCGN_26270	0.50	-0.9
3,999,667	+	ydcZ	HEPCGN_26270	0.50	-0.3
3,999,668	-	ydcZ	HEPCGN_26270	0.51	+0.1
3,999,668	-	ydcZ	HEPCGN_26270	0.51	+0.2
3,999,724	+	ydcZ	HEPCGN_26270	0.63	-2.0
3,999,725	-	ydcZ	HEPCGN_26270	0.63	+1.1
3,999,732	-	ydcZ	HEPCGN_26270	0.65	+0.5
3,999,732	-	ydcZ	HEPCGN_26270	0.65	-0.5
3,999,934	-				-0.3
3,999,934	-				-0.0
3,999,964	-	mddA	HEPCGN_26275	0.15	+0.2
4,000,102	+	mddA	HEPCGN_26275	0.42	+0.3