Strain Fitness in Escherichia coli ECOR38 around HEPCGN_26180

Experiment: TP12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP12
3,981,978	-	opgD	HEPCGN_26170	0.72	+0.0
3,982,247	-	opgD	HEPCGN_26170	0.88	-1.2
3,982,330	+				-0.5
3,982,408	+				-1.2
3,982,510	+				+1.2
3,982,597	-	ydcH	HEPCGN_26175	0.10	-0.6
3,982,704	-	ydcH	HEPCGN_26175	0.58	-0.7
3,982,796	+				+1.2
3,982,796	+				+0.6
3,982,857	+				-0.5
3,982,857	+				+0.5
3,982,899	-		HEPCGN_26180	0.37	-0.3
3,982,933	+		HEPCGN_26180	0.71	-0.9
3,982,960	+				+0.0
3,982,960	+				+0.1
3,982,965	-				-0.8
3,983,036	+				-0.2
3,983,094	+	rimL	HEPCGN_26185	0.15	+0.0
3,983,241	+	rimL	HEPCGN_26185	0.56	-0.8
3,983,373	-				-1.2
3,983,373	-				+2.2
3,983,374	+				-1.2
3,983,560	+	ydcK	HEPCGN_26190	0.17	+0.1
3,983,664	-	ydcK	HEPCGN_26190	0.28	-1.5
3,983,685	-	ydcK	HEPCGN_26190	0.30	-1.0
3,983,685	-	ydcK	HEPCGN_26190	0.30	-0.1
3,983,918	-	ydcK	HEPCGN_26190	0.54	+0.2
3,983,941	+	ydcK	HEPCGN_26190	0.56	-1.7