Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_25495 and yciE are separated by 354 nucleotides yciE and yciF are separated by 93 nucleotides yciF and yciG are separated by 85 nucleotides yciG and trpA are separated by 380 nucleotides
HEPCGN_25495: HEPCGN_25495 - DNA-damage-inducible protein DinI, at 3,836,781 to 3,836,882
_25495
HEPCGN_25500: yciE - Protein YciE, at 3,837,237 to 3,837,695
yciE
HEPCGN_25505: yciF - Protein YciF, at 3,837,789 to 3,838,289
yciF
HEPCGN_25510: yciG - Uncharacterized protein YciG, at 3,838,375 to 3,838,554
yciG
HEPCGN_25515: trpA - tryptophan synthase subunit alpha, at 3,838,935 to 3,839,741
trpA
Position (kb) 3837
3838
3839 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 3836.835 kb on + strand, within HEPCGN_25495 at 3836.835 kb on + strand, within HEPCGN_25495 at 3836.885 kb on + strand at 3836.885 kb on + strand at 3836.912 kb on - strand at 3836.926 kb on - strand at 3837.058 kb on - strand at 3837.412 kb on + strand, within yciE at 3837.716 kb on - strand at 3838.034 kb on + strand, within yciF at 3838.359 kb on - strand at 3838.813 kb on + strand at 3839.102 kb on + strand, within trpA at 3839.134 kb on + strand, within trpA at 3839.214 kb on + strand, within trpA at 3839.214 kb on + strand, within trpA at 3839.214 kb on + strand, within trpA at 3839.218 kb on + strand, within trpA at 3839.219 kb on - strand, within trpA at 3839.224 kb on + strand, within trpA at 3839.237 kb on - strand, within trpA
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 3,836,835 + HEPCGN_25495 0.53 +0.5 3,836,835 + HEPCGN_25495 0.53 +0.8 3,836,885 + +1.0 3,836,885 + +0.6 3,836,912 - -0.5 3,836,926 - +0.1 3,837,058 - +0.6 3,837,412 + yciE HEPCGN_25500 0.38 -1.0 3,837,716 - -2.6 3,838,034 + yciF HEPCGN_25505 0.49 -0.8 3,838,359 - +0.6 3,838,813 + +0.3 3,839,102 + trpA HEPCGN_25515 0.21 +0.6 3,839,134 + trpA HEPCGN_25515 0.25 +0.8 3,839,214 + trpA HEPCGN_25515 0.35 +0.6 3,839,214 + trpA HEPCGN_25515 0.35 +2.3 3,839,214 + trpA HEPCGN_25515 0.35 +1.0 3,839,218 + trpA HEPCGN_25515 0.35 +0.3 3,839,219 - trpA HEPCGN_25515 0.35 +0.5 3,839,224 + trpA HEPCGN_25515 0.36 -0.6 3,839,237 - trpA HEPCGN_25515 0.37 +5.3
Or see this region's nucleotide sequence