Strain Fitness in Escherichia coli ECOR38 around HEPCGN_23860

Experiment: TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_23850 and HEPCGN_23855 are separated by 65 nucleotidesHEPCGN_23855 and rne are separated by 133 nucleotidesrne and rluC are separated by 572 nucleotides HEPCGN_23850: HEPCGN_23850 - GNAT family N-acetyltransferase, at 3,558,276 to 3,558,701 _23850 HEPCGN_23855: HEPCGN_23855 - CopG family transcriptional regulator, at 3,558,767 to 3,559,060 _23855 HEPCGN_23860: rne - ribonuclease E, at 3,559,194 to 3,562,379 rne HEPCGN_23865: rluC - 23S rRNA pseudouridine(955/2504/2580) synthase RluC, at 3,562,952 to 3,563,911 rluC Position (kb) 3559 3560 3561 3562 3563Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3558.197 kb on + strandat 3558.197 kb on + strandat 3558.198 kb on - strandat 3558.198 kb on - strandat 3558.277 kb on + strandat 3558.277 kb on + strandat 3558.278 kb on - strandat 3558.318 kb on + strandat 3558.324 kb on - strand, within HEPCGN_23850at 3558.324 kb on - strand, within HEPCGN_23850at 3558.433 kb on - strand, within HEPCGN_23850at 3558.433 kb on - strand, within HEPCGN_23850at 3558.495 kb on - strand, within HEPCGN_23850at 3558.498 kb on + strand, within HEPCGN_23850at 3558.498 kb on + strand, within HEPCGN_23850at 3558.498 kb on + strand, within HEPCGN_23850at 3558.516 kb on + strand, within HEPCGN_23850at 3558.520 kb on - strand, within HEPCGN_23850at 3558.520 kb on - strand, within HEPCGN_23850at 3558.601 kb on + strand, within HEPCGN_23850at 3558.601 kb on + strand, within HEPCGN_23850at 3558.602 kb on - strand, within HEPCGN_23850at 3558.602 kb on - strand, within HEPCGN_23850at 3558.604 kb on + strand, within HEPCGN_23850at 3558.605 kb on - strand, within HEPCGN_23850at 3558.605 kb on - strand, within HEPCGN_23850at 3558.621 kb on - strand, within HEPCGN_23850at 3558.621 kb on - strand, within HEPCGN_23850at 3558.622 kb on + strand, within HEPCGN_23850at 3558.622 kb on + strand, within HEPCGN_23850at 3558.622 kb on + strand, within HEPCGN_23850at 3558.622 kb on + strand, within HEPCGN_23850at 3558.622 kb on + strand, within HEPCGN_23850at 3558.622 kb on + strand, within HEPCGN_23850at 3558.623 kb on - strand, within HEPCGN_23850at 3558.623 kb on - strand, within HEPCGN_23850at 3558.623 kb on - strand, within HEPCGN_23850at 3558.623 kb on - strand, within HEPCGN_23850at 3558.626 kb on + strand, within HEPCGN_23850at 3558.645 kb on - strand, within HEPCGN_23850at 3558.695 kb on + strandat 3558.865 kb on - strand, within HEPCGN_23855at 3559.060 kb on + strandat 3559.061 kb on - strandat 3559.064 kb on + strandat 3559.064 kb on + strandat 3559.065 kb on - strandat 3559.094 kb on + strandat 3559.095 kb on - strandat 3559.095 kb on - strandat 3559.095 kb on - strandat 3559.123 kb on - strandat 3559.137 kb on - strandat 3559.188 kb on + strandat 3559.192 kb on + strandat 3559.192 kb on + strandat 3559.192 kb on + strandat 3559.193 kb on - strandat 3559.371 kb on - strandat 3559.614 kb on + strand, within rneat 3559.786 kb on - strand, within rneat 3559.786 kb on - strand, within rneat 3559.818 kb on + strand, within rneat 3560.242 kb on - strand, within rneat 3560.242 kb on - strand, within rneat 3560.378 kb on + strand, within rneat 3562.650 kb on - strandat 3562.657 kb on - strandat 3562.772 kb on - strandat 3562.772 kb on - strandat 3562.793 kb on + strandat 3562.794 kb on - strandat 3562.794 kb on - strandat 3562.794 kb on - strandat 3562.875 kb on + strandat 3562.898 kb on - strandat 3562.898 kb on - strandat 3562.903 kb on + strandat 3562.939 kb on - strandat 3563.110 kb on + strand, within rluCat 3563.111 kb on - strand, within rluCat 3563.113 kb on + strand, within rluCat 3563.114 kb on - strand, within rluCat 3563.114 kb on - strand, within rluCat 3563.238 kb on + strand, within rluCat 3563.238 kb on + strand, within rluCat 3563.238 kb on + strand, within rluCat 3563.239 kb on - strand, within rluCat 3563.239 kb on - strand, within rluCat 3563.239 kb on - strand, within rluCat 3563.241 kb on - strand, within rluCat 3563.290 kb on - strand, within rluCat 3563.308 kb on - strand, within rluC

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Per-strain Table

Position Strand Gene LocusTag Fraction TP12
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3,558,197 + -0.5
3,558,197 + -0.8
3,558,198 - -0.3
3,558,198 - +0.5
3,558,277 + -1.7
3,558,277 + +0.1
3,558,278 - +0.1
3,558,318 + +0.7
3,558,324 - HEPCGN_23850 0.11 +1.4
3,558,324 - HEPCGN_23850 0.11 -0.5
3,558,433 - HEPCGN_23850 0.37 +0.5
3,558,433 - HEPCGN_23850 0.37 -0.4
3,558,495 - HEPCGN_23850 0.51 +1.6
3,558,498 + HEPCGN_23850 0.52 +0.4
3,558,498 + HEPCGN_23850 0.52 -0.4
3,558,498 + HEPCGN_23850 0.52 -0.5
3,558,516 + HEPCGN_23850 0.56 +0.1
3,558,520 - HEPCGN_23850 0.57 -0.0
3,558,520 - HEPCGN_23850 0.57 +0.3
3,558,601 + HEPCGN_23850 0.76 +0.1
3,558,601 + HEPCGN_23850 0.76 +0.5
3,558,602 - HEPCGN_23850 0.77 -0.0
3,558,602 - HEPCGN_23850 0.77 +0.2
3,558,604 + HEPCGN_23850 0.77 +0.7
3,558,605 - HEPCGN_23850 0.77 +1.3
3,558,605 - HEPCGN_23850 0.77 -0.4
3,558,621 - HEPCGN_23850 0.81 +0.2
3,558,621 - HEPCGN_23850 0.81 +0.0
3,558,622 + HEPCGN_23850 0.81 -0.0
3,558,622 + HEPCGN_23850 0.81 -0.3
3,558,622 + HEPCGN_23850 0.81 +1.3
3,558,622 + HEPCGN_23850 0.81 -0.3
3,558,622 + HEPCGN_23850 0.81 -1.8
3,558,622 + HEPCGN_23850 0.81 +0.2
3,558,623 - HEPCGN_23850 0.81 +0.6
3,558,623 - HEPCGN_23850 0.81 -0.2
3,558,623 - HEPCGN_23850 0.81 -0.5
3,558,623 - HEPCGN_23850 0.81 -1.1
3,558,626 + HEPCGN_23850 0.82 -0.3
3,558,645 - HEPCGN_23850 0.87 +0.0
3,558,695 + +1.5
3,558,865 - HEPCGN_23855 0.33 -0.4
3,559,060 + -0.0
3,559,061 - +0.9
3,559,064 + +0.4
3,559,064 + -0.4
3,559,065 - -0.1
3,559,094 + +0.6
3,559,095 - +0.2
3,559,095 - -0.2
3,559,095 - -1.1
3,559,123 - +3.3
3,559,137 - -0.5
3,559,188 + +0.6
3,559,192 + -3.4
3,559,192 + -1.8
3,559,192 + +0.3
3,559,193 - -0.1
3,559,371 - +0.1
3,559,614 + rne HEPCGN_23860 0.13 -1.4
3,559,786 - rne HEPCGN_23860 0.19 -0.1
3,559,786 - rne HEPCGN_23860 0.19 +2.3
3,559,818 + rne HEPCGN_23860 0.20 +0.0
3,560,242 - rne HEPCGN_23860 0.33 -1.5
3,560,242 - rne HEPCGN_23860 0.33 -2.0
3,560,378 + rne HEPCGN_23860 0.37 -1.3
3,562,650 - +0.1
3,562,657 - +0.5
3,562,772 - -0.8
3,562,772 - -0.1
3,562,793 + -0.4
3,562,794 - -1.0
3,562,794 - -0.7
3,562,794 - -1.3
3,562,875 + -0.1
3,562,898 - +1.1
3,562,898 - -1.8
3,562,903 + -1.5
3,562,939 - +0.5
3,563,110 + rluC HEPCGN_23865 0.16 -0.1
3,563,111 - rluC HEPCGN_23865 0.17 -0.1
3,563,113 + rluC HEPCGN_23865 0.17 +0.1
3,563,114 - rluC HEPCGN_23865 0.17 -0.8
3,563,114 - rluC HEPCGN_23865 0.17 +0.1
3,563,238 + rluC HEPCGN_23865 0.30 -0.1
3,563,238 + rluC HEPCGN_23865 0.30 -0.4
3,563,238 + rluC HEPCGN_23865 0.30 -0.3
3,563,239 - rluC HEPCGN_23865 0.30 -0.5
3,563,239 - rluC HEPCGN_23865 0.30 +0.4
3,563,239 - rluC HEPCGN_23865 0.30 -0.5
3,563,241 - rluC HEPCGN_23865 0.30 +0.3
3,563,290 - rluC HEPCGN_23865 0.35 -0.4
3,563,308 - rluC HEPCGN_23865 0.37 +0.0

Or see this region's nucleotide sequence