Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_23850 and HEPCGN_23855 are separated by 65 nucleotides HEPCGN_23855 and rne are separated by 133 nucleotides rne and rluC are separated by 572 nucleotides
HEPCGN_23850: HEPCGN_23850 - GNAT family N-acetyltransferase, at 3,558,276 to 3,558,701
_23850
HEPCGN_23855: HEPCGN_23855 - CopG family transcriptional regulator, at 3,558,767 to 3,559,060
_23855
HEPCGN_23860: rne - ribonuclease E, at 3,559,194 to 3,562,379
rne
HEPCGN_23865: rluC - 23S rRNA pseudouridine(955/2504/2580) synthase RluC, at 3,562,952 to 3,563,911
rluC
Position (kb)
3559
3560
3561
3562
3563 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3558.197 kb on + strand at 3558.197 kb on + strand at 3558.198 kb on - strand at 3558.198 kb on - strand at 3558.277 kb on + strand at 3558.277 kb on + strand at 3558.278 kb on - strand at 3558.318 kb on + strand at 3558.324 kb on - strand, within HEPCGN_23850 at 3558.324 kb on - strand, within HEPCGN_23850 at 3558.433 kb on - strand, within HEPCGN_23850 at 3558.433 kb on - strand, within HEPCGN_23850 at 3558.495 kb on - strand, within HEPCGN_23850 at 3558.498 kb on + strand, within HEPCGN_23850 at 3558.498 kb on + strand, within HEPCGN_23850 at 3558.498 kb on + strand, within HEPCGN_23850 at 3558.516 kb on + strand, within HEPCGN_23850 at 3558.520 kb on - strand, within HEPCGN_23850 at 3558.520 kb on - strand, within HEPCGN_23850 at 3558.601 kb on + strand, within HEPCGN_23850 at 3558.601 kb on + strand, within HEPCGN_23850 at 3558.602 kb on - strand, within HEPCGN_23850 at 3558.602 kb on - strand, within HEPCGN_23850 at 3558.604 kb on + strand, within HEPCGN_23850 at 3558.605 kb on - strand, within HEPCGN_23850 at 3558.605 kb on - strand, within HEPCGN_23850 at 3558.621 kb on - strand, within HEPCGN_23850 at 3558.621 kb on - strand, within HEPCGN_23850 at 3558.622 kb on + strand, within HEPCGN_23850 at 3558.622 kb on + strand, within HEPCGN_23850 at 3558.622 kb on + strand, within HEPCGN_23850 at 3558.622 kb on + strand, within HEPCGN_23850 at 3558.622 kb on + strand, within HEPCGN_23850 at 3558.622 kb on + strand, within HEPCGN_23850 at 3558.623 kb on - strand, within HEPCGN_23850 at 3558.623 kb on - strand, within HEPCGN_23850 at 3558.623 kb on - strand, within HEPCGN_23850 at 3558.623 kb on - strand, within HEPCGN_23850 at 3558.626 kb on + strand, within HEPCGN_23850 at 3558.645 kb on - strand, within HEPCGN_23850 at 3558.695 kb on + strand at 3558.865 kb on - strand, within HEPCGN_23855 at 3559.060 kb on + strand at 3559.061 kb on - strand at 3559.064 kb on + strand at 3559.064 kb on + strand at 3559.065 kb on - strand at 3559.094 kb on + strand at 3559.095 kb on - strand at 3559.095 kb on - strand at 3559.095 kb on - strand at 3559.123 kb on - strand at 3559.137 kb on - strand at 3559.188 kb on + strand at 3559.192 kb on + strand at 3559.192 kb on + strand at 3559.192 kb on + strand at 3559.193 kb on - strand at 3559.371 kb on - strand at 3559.614 kb on + strand, within rne at 3559.786 kb on - strand, within rne at 3559.786 kb on - strand, within rne at 3559.818 kb on + strand, within rne at 3560.242 kb on - strand, within rne at 3560.242 kb on - strand, within rne at 3560.378 kb on + strand, within rne at 3562.650 kb on - strand at 3562.657 kb on - strand at 3562.772 kb on - strand at 3562.772 kb on - strand at 3562.793 kb on + strand at 3562.794 kb on - strand at 3562.794 kb on - strand at 3562.794 kb on - strand at 3562.875 kb on + strand at 3562.898 kb on - strand at 3562.898 kb on - strand at 3562.903 kb on + strand at 3562.939 kb on - strand at 3563.110 kb on + strand, within rluC at 3563.111 kb on - strand, within rluC at 3563.113 kb on + strand, within rluC at 3563.114 kb on - strand, within rluC at 3563.114 kb on - strand, within rluC at 3563.238 kb on + strand, within rluC at 3563.238 kb on + strand, within rluC at 3563.238 kb on + strand, within rluC at 3563.239 kb on - strand, within rluC at 3563.239 kb on - strand, within rluC at 3563.239 kb on - strand, within rluC at 3563.241 kb on - strand, within rluC at 3563.290 kb on - strand, within rluC at 3563.308 kb on - strand, within rluC
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 3,558,197 + -0.5 3,558,197 + -0.8 3,558,198 - -0.3 3,558,198 - +0.5 3,558,277 + -1.7 3,558,277 + +0.1 3,558,278 - +0.1 3,558,318 + +0.7 3,558,324 - HEPCGN_23850 0.11 +1.4 3,558,324 - HEPCGN_23850 0.11 -0.5 3,558,433 - HEPCGN_23850 0.37 +0.5 3,558,433 - HEPCGN_23850 0.37 -0.4 3,558,495 - HEPCGN_23850 0.51 +1.6 3,558,498 + HEPCGN_23850 0.52 +0.4 3,558,498 + HEPCGN_23850 0.52 -0.4 3,558,498 + HEPCGN_23850 0.52 -0.5 3,558,516 + HEPCGN_23850 0.56 +0.1 3,558,520 - HEPCGN_23850 0.57 -0.0 3,558,520 - HEPCGN_23850 0.57 +0.3 3,558,601 + HEPCGN_23850 0.76 +0.1 3,558,601 + HEPCGN_23850 0.76 +0.5 3,558,602 - HEPCGN_23850 0.77 -0.0 3,558,602 - HEPCGN_23850 0.77 +0.2 3,558,604 + HEPCGN_23850 0.77 +0.7 3,558,605 - HEPCGN_23850 0.77 +1.3 3,558,605 - HEPCGN_23850 0.77 -0.4 3,558,621 - HEPCGN_23850 0.81 +0.2 3,558,621 - HEPCGN_23850 0.81 +0.0 3,558,622 + HEPCGN_23850 0.81 -0.0 3,558,622 + HEPCGN_23850 0.81 -0.3 3,558,622 + HEPCGN_23850 0.81 +1.3 3,558,622 + HEPCGN_23850 0.81 -0.3 3,558,622 + HEPCGN_23850 0.81 -1.8 3,558,622 + HEPCGN_23850 0.81 +0.2 3,558,623 - HEPCGN_23850 0.81 +0.6 3,558,623 - HEPCGN_23850 0.81 -0.2 3,558,623 - HEPCGN_23850 0.81 -0.5 3,558,623 - HEPCGN_23850 0.81 -1.1 3,558,626 + HEPCGN_23850 0.82 -0.3 3,558,645 - HEPCGN_23850 0.87 +0.0 3,558,695 + +1.5 3,558,865 - HEPCGN_23855 0.33 -0.4 3,559,060 + -0.0 3,559,061 - +0.9 3,559,064 + +0.4 3,559,064 + -0.4 3,559,065 - -0.1 3,559,094 + +0.6 3,559,095 - +0.2 3,559,095 - -0.2 3,559,095 - -1.1 3,559,123 - +3.3 3,559,137 - -0.5 3,559,188 + +0.6 3,559,192 + -3.4 3,559,192 + -1.8 3,559,192 + +0.3 3,559,193 - -0.1 3,559,371 - +0.1 3,559,614 + rne HEPCGN_23860 0.13 -1.4 3,559,786 - rne HEPCGN_23860 0.19 -0.1 3,559,786 - rne HEPCGN_23860 0.19 +2.3 3,559,818 + rne HEPCGN_23860 0.20 +0.0 3,560,242 - rne HEPCGN_23860 0.33 -1.5 3,560,242 - rne HEPCGN_23860 0.33 -2.0 3,560,378 + rne HEPCGN_23860 0.37 -1.3 3,562,650 - +0.1 3,562,657 - +0.5 3,562,772 - -0.8 3,562,772 - -0.1 3,562,793 + -0.4 3,562,794 - -1.0 3,562,794 - -0.7 3,562,794 - -1.3 3,562,875 + -0.1 3,562,898 - +1.1 3,562,898 - -1.8 3,562,903 + -1.5 3,562,939 - +0.5 3,563,110 + rluC HEPCGN_23865 0.16 -0.1 3,563,111 - rluC HEPCGN_23865 0.17 -0.1 3,563,113 + rluC HEPCGN_23865 0.17 +0.1 3,563,114 - rluC HEPCGN_23865 0.17 -0.8 3,563,114 - rluC HEPCGN_23865 0.17 +0.1 3,563,238 + rluC HEPCGN_23865 0.30 -0.1 3,563,238 + rluC HEPCGN_23865 0.30 -0.4 3,563,238 + rluC HEPCGN_23865 0.30 -0.3 3,563,239 - rluC HEPCGN_23865 0.30 -0.5 3,563,239 - rluC HEPCGN_23865 0.30 +0.4 3,563,239 - rluC HEPCGN_23865 0.30 -0.5 3,563,241 - rluC HEPCGN_23865 0.30 +0.3 3,563,290 - rluC HEPCGN_23865 0.35 -0.4 3,563,308 - rluC HEPCGN_23865 0.37 +0.0
Or see this region's nucleotide sequence