Strain Fitness in Escherichia coli ECOR38 around HEPCGN_22500

Experiment: TP12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP12
3,273,186	-	mqo	HEPCGN_22490	0.90	+0.5
3,273,210	+				+0.0
3,273,286	+				-0.3
3,273,287	-				+0.1
3,273,287	-				+0.1
3,273,287	-				+0.6
3,273,289	+				+0.2
3,273,290	-				-1.0
3,273,350	+				+0.3
3,273,350	+				-0.2
3,273,350	+				-0.1
3,273,350	+				-0.5
3,273,350	+				-1.9
3,273,350	+				+0.7
3,273,351	-				+0.9
3,273,351	-				+2.1
3,273,351	-				-1.2
3,273,400	-				+0.2
3,273,498	+				+0.5
3,273,498	+				+0.1
3,273,499	-				-0.8
3,273,499	-				+0.2
3,273,551	+	eco	HEPCGN_22495	0.10	+0.2
3,273,577	-	eco	HEPCGN_22495	0.15	-0.8
3,273,603	+	eco	HEPCGN_22495	0.21	+1.6
3,273,606	-	eco	HEPCGN_22495	0.21	-0.1
3,273,717	-	eco	HEPCGN_22495	0.44	+1.4
3,273,720	-	eco	HEPCGN_22495	0.45	-1.1
3,273,809	-	eco	HEPCGN_22495	0.63	-0.1
3,273,817	+	eco	HEPCGN_22495	0.64	+0.4
3,273,829	-	eco	HEPCGN_22495	0.67	-0.3
3,273,893	+	eco	HEPCGN_22495	0.80	+0.1
3,273,893	+	eco	HEPCGN_22495	0.80	+0.3
3,273,894	-	eco	HEPCGN_22495	0.80	+1.4
3,273,976	+				+0.8
3,273,977	-				+0.1
3,274,051	-				-0.0
3,274,082	+				+1.1
3,274,082	+				+0.8
3,274,083	-				-0.7
3,274,155	-	yojO	HEPCGN_22500	0.18	-0.1
3,274,155	-	yojO	HEPCGN_22500	0.18	-1.7
3,274,159	-	yojO	HEPCGN_22500	0.21	-0.7
3,274,269	+	yojO	HEPCGN_22500	0.87	-1.3
3,274,305	+				+0.3
3,274,309	-				-0.2
3,274,380	+				-0.6
3,274,381	-				-0.9
3,274,384	+				-0.6
3,274,385	-				-1.5
3,274,427	-				+0.4
3,274,604	+	napF	HEPCGN_22510	0.42	-0.6
3,274,764	-	napF	HEPCGN_22510	0.74	+1.6
3,274,805	+	napF	HEPCGN_22510	0.82	-0.2
3,274,806	-	napF	HEPCGN_22510	0.82	-0.3
3,274,864	+				+0.6
3,274,865	-				+1.9
3,274,865	-				+0.8
3,274,875	+				-0.4
3,274,890	+				+0.5
3,274,890	+				+0.2
3,274,890	+				+1.0
3,275,069	+	napD	HEPCGN_22515	0.71	+0.1
3,275,070	-	napD	HEPCGN_22515	0.71	+1.9
3,275,258	+				+0.1