Strain Fitness in Escherichia coli ECOR38 around HEPCGN_19505

Experiment: TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrelA and mazE are separated by 77 nucleotidesmazE and mazF overlap by 1 nucleotidesmazF and mazG are separated by 71 nucleotides HEPCGN_19500: relA - GTP diphosphokinase, at 2,656,812 to 2,659,046 relA HEPCGN_19505: mazE - type II toxin-antitoxin system antitoxin MazE, at 2,659,124 to 2,659,372 mazE HEPCGN_19510: mazF - endoribonuclease MazF, at 2,659,372 to 2,659,707 mazF HEPCGN_19515: mazG - nucleoside triphosphate pyrophosphohydrolase, at 2,659,779 to 2,660,570 mazG Position (kb) 2659 2660Strain fitness (log2 ratio) -2 -1 0 1at 2658.200 kb on + strand, within relAat 2658.412 kb on - strand, within relAat 2658.564 kb on + strand, within relAat 2658.608 kb on - strand, within relAat 2658.793 kb on - strand, within relAat 2658.793 kb on - strand, within relAat 2658.850 kb on + strandat 2658.850 kb on + strandat 2658.850 kb on + strandat 2658.857 kb on + strandat 2658.892 kb on + strandat 2658.893 kb on - strandat 2658.893 kb on - strandat 2658.893 kb on - strandat 2658.992 kb on + strandat 2659.045 kb on - strandat 2659.045 kb on - strandat 2659.074 kb on - strandat 2659.086 kb on - strandat 2659.091 kb on - strandat 2659.091 kb on - strandat 2659.094 kb on + strandat 2659.141 kb on - strandat 2659.180 kb on + strand, within mazEat 2659.180 kb on + strand, within mazEat 2659.208 kb on - strand, within mazEat 2659.248 kb on + strand, within mazEat 2659.282 kb on + strand, within mazEat 2659.282 kb on + strand, within mazEat 2659.358 kb on - strandat 2659.375 kb on + strandat 2659.376 kb on + strandat 2659.486 kb on + strand, within mazFat 2659.486 kb on + strand, within mazFat 2659.486 kb on + strand, within mazFat 2659.504 kb on - strand, within mazFat 2659.586 kb on + strand, within mazFat 2659.593 kb on - strand, within mazFat 2659.593 kb on - strand, within mazFat 2659.713 kb on - strandat 2659.899 kb on + strand, within mazGat 2659.899 kb on + strand, within mazGat 2659.899 kb on + strand, within mazGat 2659.983 kb on + strand, within mazGat 2660.028 kb on - strand, within mazGat 2660.102 kb on + strand, within mazGat 2660.181 kb on - strand, within mazGat 2660.272 kb on + strand, within mazGat 2660.272 kb on + strand, within mazGat 2660.311 kb on - strand, within mazG

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Per-strain Table

Position Strand Gene LocusTag Fraction TP12
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2,658,200 + relA HEPCGN_19500 0.62 -0.5
2,658,412 - relA HEPCGN_19500 0.72 +1.0
2,658,564 + relA HEPCGN_19500 0.78 -0.4
2,658,608 - relA HEPCGN_19500 0.80 -0.8
2,658,793 - relA HEPCGN_19500 0.89 -0.3
2,658,793 - relA HEPCGN_19500 0.89 +0.4
2,658,850 + -0.7
2,658,850 + +0.6
2,658,850 + +0.1
2,658,857 + -0.2
2,658,892 + -0.4
2,658,893 - +0.2
2,658,893 - +0.1
2,658,893 - -0.4
2,658,992 + +0.3
2,659,045 - -0.6
2,659,045 - -0.8
2,659,074 - -0.1
2,659,086 - +0.4
2,659,091 - +0.2
2,659,091 - +0.5
2,659,094 + +0.3
2,659,141 - -1.0
2,659,180 + mazE HEPCGN_19505 0.22 -0.5
2,659,180 + mazE HEPCGN_19505 0.22 -2.4
2,659,208 - mazE HEPCGN_19505 0.34 +0.0
2,659,248 + mazE HEPCGN_19505 0.50 -0.6
2,659,282 + mazE HEPCGN_19505 0.63 -2.1
2,659,282 + mazE HEPCGN_19505 0.63 -2.0
2,659,358 - +0.5
2,659,375 + +0.9
2,659,376 + -0.3
2,659,486 + mazF HEPCGN_19510 0.34 -0.4
2,659,486 + mazF HEPCGN_19510 0.34 -0.6
2,659,486 + mazF HEPCGN_19510 0.34 -0.7
2,659,504 - mazF HEPCGN_19510 0.39 -0.3
2,659,586 + mazF HEPCGN_19510 0.64 +0.5
2,659,593 - mazF HEPCGN_19510 0.66 -0.4
2,659,593 - mazF HEPCGN_19510 0.66 +0.6
2,659,713 - +0.0
2,659,899 + mazG HEPCGN_19515 0.15 +0.2
2,659,899 + mazG HEPCGN_19515 0.15 +0.5
2,659,899 + mazG HEPCGN_19515 0.15 -0.4
2,659,983 + mazG HEPCGN_19515 0.26 +0.0
2,660,028 - mazG HEPCGN_19515 0.31 -0.8
2,660,102 + mazG HEPCGN_19515 0.41 -0.5
2,660,181 - mazG HEPCGN_19515 0.51 -0.6
2,660,272 + mazG HEPCGN_19515 0.62 -0.4
2,660,272 + mazG HEPCGN_19515 0.62 +0.3
2,660,311 - mazG HEPCGN_19515 0.67 +0.1

Or see this region's nucleotide sequence