Strain Fitness in Escherichia coli ECOR38 around HEPCGN_15925

Experiment: TP12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP12
1,957,647	+				+0.0
1,957,752	-	hofO	HEPCGN_15915	0.18	-0.8
1,957,755	+	hofO	HEPCGN_15915	0.19	+0.0
1,957,755	+	hofO	HEPCGN_15915	0.19	+2.4
1,957,756	-	hofO	HEPCGN_15915	0.19	-0.1
1,957,756	-	hofO	HEPCGN_15915	0.19	-0.4
1,957,756	-	hofO	HEPCGN_15915	0.19	-1.1
1,957,847	-	hofO	HEPCGN_15915	0.40	+0.2
1,958,084	+				+0.4
1,958,131	+				+0.3
1,958,131	+				+0.5
1,958,132	-				-0.5
1,958,188	-	hofP	HEPCGN_15920	0.21	-0.2
1,958,219	+	hofP	HEPCGN_15920	0.29	-0.5
1,958,232	+	hofP	HEPCGN_15920	0.32	+0.4
1,958,233	-	hofP	HEPCGN_15920	0.32	+1.0
1,958,233	-	hofP	HEPCGN_15920	0.32	+0.3
1,958,233	-	hofP	HEPCGN_15920	0.32	-0.7
1,958,349	+	hofP	HEPCGN_15920	0.61	-0.0
1,958,350	-	hofP	HEPCGN_15920	0.61	-0.3
1,958,350	-	hofP	HEPCGN_15920	0.61	-0.2
1,958,350	-	hofP	HEPCGN_15920	0.61	+0.4
1,958,352	+	hofP	HEPCGN_15920	0.62	-0.3
1,958,353	-	hofP	HEPCGN_15920	0.62	+0.8
1,958,353	-	hofP	HEPCGN_15920	0.62	+1.0
1,958,414	-	hofP	HEPCGN_15920	0.77	+0.4
1,958,414	-	hofP	HEPCGN_15920	0.77	+0.3
1,958,425	+	hofP	HEPCGN_15920	0.80	+0.6
1,958,425	+	hofP	HEPCGN_15920	0.80	-1.2
1,958,425	+	hofP	HEPCGN_15920	0.80	+0.2
1,958,426	-	hofP	HEPCGN_15920	0.80	-0.3
1,958,426	-	hofP	HEPCGN_15920	0.80	-3.1
1,958,440	+	hofP	HEPCGN_15920	0.83	-0.6
1,958,516	-				+1.4
1,958,596	+	hofQ	HEPCGN_15925	0.12	+0.3
1,958,596	+	hofQ	HEPCGN_15925	0.12	+0.4
1,958,596	+	hofQ	HEPCGN_15925	0.12	+0.1
1,958,597	-	hofQ	HEPCGN_15925	0.12	+0.3
1,958,603	-	hofQ	HEPCGN_15925	0.13	-0.6
1,958,660	-	hofQ	HEPCGN_15925	0.18	+0.5
1,958,783	+	hofQ	HEPCGN_15925	0.28	-0.0
1,958,783	+	hofQ	HEPCGN_15925	0.28	+0.6
1,958,784	-	hofQ	HEPCGN_15925	0.28	+1.0
1,958,853	-	hofQ	HEPCGN_15925	0.33	+0.2
1,958,874	-	hofQ	HEPCGN_15925	0.35	+1.0
1,958,874	-	hofQ	HEPCGN_15925	0.35	+0.2
1,958,975	+	hofQ	HEPCGN_15925	0.44	+0.9
1,958,976	-	hofQ	HEPCGN_15925	0.44	+0.0
1,958,988	-	hofQ	HEPCGN_15925	0.45	+0.2
1,959,120	-	hofQ	HEPCGN_15925	0.56	+1.0
1,959,146	-	hofQ	HEPCGN_15925	0.58	+0.3
1,959,195	-	hofQ	HEPCGN_15925	0.62	+0.3
1,959,409	+	hofQ	HEPCGN_15925	0.79	+1.1
1,959,410	-	hofQ	HEPCGN_15925	0.80	+0.0
1,959,578	-				-0.5
1,959,578	-				+1.2
1,959,654	+				-1.3
1,959,720	-				+0.7
1,959,720	-				+0.8
1,959,720	-				+0.2
1,959,723	+				-3.9
1,959,724	-				+0.8
1,959,724	-				+0.8
1,959,789	+				-0.4
1,959,790	-				-0.4
1,959,843	+				+0.0
1,959,860	+				-0.0
1,959,969	-				-0.4
1,959,969	-				+0.1
1,959,973	+				-0.3
1,960,036	-				-1.1
1,960,036	-				-0.1
1,960,041	+				-0.5
1,960,042	-				+1.9
1,960,044	+				-0.8
1,960,128	-	aroK	HEPCGN_15930	0.14	-2.3
1,960,215	-	aroK	HEPCGN_15930	0.30	-2.0
1,960,577	-				-0.0
1,960,577	-				+0.2
1,960,588	+				+0.2
1,960,588	+				+0.4
1,960,589	-				-0.8
1,960,590	+				-0.2
1,960,590	+				-1.3
1,960,590	+				-0.0
1,960,590	+				-0.0
1,960,590	+				-0.5
1,960,590	+				+0.8
1,960,590	+				-0.5
1,960,591	-				-0.3
1,960,592	+				-0.0
1,960,593	-				-1.7
1,960,593	-				-0.3
1,960,593	-				-0.4
1,960,613	+				-0.3
1,960,613	+				-0.2
1,960,613	+				+0.6
1,960,613	+				+0.6