Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt asnA and asnC are separated by 151 nucleotides asnC and mioC are separated by 89 nucleotides mioC and mnmG are separated by 378 nucleotides
HEPCGN_13485: asnA - aspartate--ammonia ligase, at 1,443,938 to 1,444,930
asnA
HEPCGN_13490: asnC - transcriptional regulator AsnC, at 1,445,082 to 1,445,540
asnC
HEPCGN_13495: mioC - FMN-binding protein MioC, at 1,445,630 to 1,446,073
mioC
HEPCGN_13500: mnmG - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 1,446,452 to 1,448,341
mnmG
Position (kb)
1445
1446
1447 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1444.654 kb on - strand, within asnA at 1444.894 kb on + strand at 1444.895 kb on - strand at 1444.895 kb on - strand at 1444.895 kb on - strand at 1444.917 kb on + strand at 1444.991 kb on + strand at 1445.095 kb on + strand at 1445.131 kb on + strand, within asnC at 1445.155 kb on - strand, within asnC at 1445.284 kb on + strand, within asnC at 1445.285 kb on - strand, within asnC at 1445.303 kb on + strand, within asnC at 1445.304 kb on - strand, within asnC at 1445.305 kb on + strand, within asnC at 1445.306 kb on - strand, within asnC at 1445.306 kb on - strand, within asnC at 1445.308 kb on + strand, within asnC at 1445.326 kb on - strand, within asnC at 1445.376 kb on + strand, within asnC at 1445.377 kb on - strand, within asnC at 1445.379 kb on + strand, within asnC at 1445.379 kb on + strand, within asnC at 1445.395 kb on - strand, within asnC at 1445.395 kb on - strand, within asnC at 1445.405 kb on + strand, within asnC at 1445.406 kb on - strand, within asnC at 1445.407 kb on + strand, within asnC at 1445.407 kb on + strand, within asnC at 1445.407 kb on + strand, within asnC at 1445.446 kb on + strand, within asnC at 1445.446 kb on + strand, within asnC at 1445.446 kb on + strand, within asnC at 1445.447 kb on - strand, within asnC at 1445.450 kb on + strand, within asnC at 1445.450 kb on + strand, within asnC at 1445.450 kb on + strand, within asnC at 1445.451 kb on - strand, within asnC at 1445.451 kb on - strand, within asnC at 1445.451 kb on - strand, within asnC at 1445.451 kb on - strand, within asnC at 1445.451 kb on - strand, within asnC at 1445.525 kb on + strand at 1445.525 kb on + strand at 1445.525 kb on + strand at 1445.526 kb on - strand at 1445.532 kb on - strand at 1445.532 kb on - strand at 1445.573 kb on + strand at 1445.596 kb on + strand at 1445.596 kb on + strand at 1445.596 kb on + strand at 1445.596 kb on + strand at 1445.597 kb on - strand at 1445.597 kb on - strand at 1445.597 kb on - strand at 1445.613 kb on - strand at 1445.679 kb on - strand, within mioC at 1445.679 kb on - strand, within mioC at 1445.679 kb on - strand, within mioC at 1445.679 kb on - strand, within mioC at 1445.682 kb on + strand, within mioC at 1445.837 kb on + strand, within mioC at 1445.837 kb on + strand, within mioC at 1445.838 kb on - strand, within mioC at 1446.071 kb on + strand at 1446.071 kb on + strand at 1446.072 kb on - strand at 1446.072 kb on - strand at 1446.336 kb on + strand at 1446.394 kb on - strand at 1446.436 kb on - strand at 1446.565 kb on + strand at 1446.702 kb on + strand, within mnmG at 1446.774 kb on + strand, within mnmG at 1446.778 kb on + strand, within mnmG at 1446.778 kb on + strand, within mnmG at 1446.778 kb on + strand, within mnmG at 1446.835 kb on + strand, within mnmG at 1446.959 kb on + strand, within mnmG at 1446.960 kb on - strand, within mnmG
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 1,444,654 - asnA HEPCGN_13485 0.72 -2.0 1,444,894 + -0.9 1,444,895 - +0.1 1,444,895 - -1.2 1,444,895 - +1.1 1,444,917 + -0.3 1,444,991 + -0.3 1,445,095 + -2.0 1,445,131 + asnC HEPCGN_13490 0.11 +0.2 1,445,155 - asnC HEPCGN_13490 0.16 -0.0 1,445,284 + asnC HEPCGN_13490 0.44 +0.4 1,445,285 - asnC HEPCGN_13490 0.44 +0.1 1,445,303 + asnC HEPCGN_13490 0.48 +0.5 1,445,304 - asnC HEPCGN_13490 0.48 +0.0 1,445,305 + asnC HEPCGN_13490 0.49 +0.4 1,445,306 - asnC HEPCGN_13490 0.49 +3.0 1,445,306 - asnC HEPCGN_13490 0.49 -0.1 1,445,308 + asnC HEPCGN_13490 0.49 -0.0 1,445,326 - asnC HEPCGN_13490 0.53 -0.2 1,445,376 + asnC HEPCGN_13490 0.64 +0.3 1,445,377 - asnC HEPCGN_13490 0.64 -0.8 1,445,379 + asnC HEPCGN_13490 0.65 -1.0 1,445,379 + asnC HEPCGN_13490 0.65 +0.9 1,445,395 - asnC HEPCGN_13490 0.68 -1.2 1,445,395 - asnC HEPCGN_13490 0.68 +0.9 1,445,405 + asnC HEPCGN_13490 0.70 +0.6 1,445,406 - asnC HEPCGN_13490 0.71 -0.2 1,445,407 + asnC HEPCGN_13490 0.71 -0.3 1,445,407 + asnC HEPCGN_13490 0.71 -0.2 1,445,407 + asnC HEPCGN_13490 0.71 -0.4 1,445,446 + asnC HEPCGN_13490 0.79 +0.3 1,445,446 + asnC HEPCGN_13490 0.79 +0.2 1,445,446 + asnC HEPCGN_13490 0.79 -0.8 1,445,447 - asnC HEPCGN_13490 0.80 +0.8 1,445,450 + asnC HEPCGN_13490 0.80 -0.3 1,445,450 + asnC HEPCGN_13490 0.80 -0.9 1,445,450 + asnC HEPCGN_13490 0.80 -0.3 1,445,451 - asnC HEPCGN_13490 0.80 +0.6 1,445,451 - asnC HEPCGN_13490 0.80 +0.2 1,445,451 - asnC HEPCGN_13490 0.80 +0.5 1,445,451 - asnC HEPCGN_13490 0.80 -0.8 1,445,451 - asnC HEPCGN_13490 0.80 -3.1 1,445,525 + -0.7 1,445,525 + +0.6 1,445,525 + +0.0 1,445,526 - -1.5 1,445,532 - -0.2 1,445,532 - -0.0 1,445,573 + +1.0 1,445,596 + -0.8 1,445,596 + +0.1 1,445,596 + +0.5 1,445,596 + +0.0 1,445,597 - +0.5 1,445,597 - -0.6 1,445,597 - -0.2 1,445,613 - +0.6 1,445,679 - mioC HEPCGN_13495 0.11 -1.1 1,445,679 - mioC HEPCGN_13495 0.11 -0.4 1,445,679 - mioC HEPCGN_13495 0.11 -1.2 1,445,679 - mioC HEPCGN_13495 0.11 -0.6 1,445,682 + mioC HEPCGN_13495 0.12 -0.3 1,445,837 + mioC HEPCGN_13495 0.47 -0.5 1,445,837 + mioC HEPCGN_13495 0.47 -1.0 1,445,838 - mioC HEPCGN_13495 0.47 -0.5 1,446,071 + +0.9 1,446,071 + -0.6 1,446,072 - +1.7 1,446,072 - +1.4 1,446,336 + +0.2 1,446,394 - +0.8 1,446,436 - +1.3 1,446,565 + -1.0 1,446,702 + mnmG HEPCGN_13500 0.13 -2.1 1,446,774 + mnmG HEPCGN_13500 0.17 -2.9 1,446,778 + mnmG HEPCGN_13500 0.17 +0.7 1,446,778 + mnmG HEPCGN_13500 0.17 -0.7 1,446,778 + mnmG HEPCGN_13500 0.17 -2.6 1,446,835 + mnmG HEPCGN_13500 0.20 +0.2 1,446,959 + mnmG HEPCGN_13500 0.27 -2.1 1,446,960 - mnmG HEPCGN_13500 0.27 -1.5
Or see this region's nucleotide sequence