Strain Fitness in Escherichia coli ECOR38 around HEPCGN_13320

Experiment: TP12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP12
1,407,120	-	gppA	HEPCGN_13315	0.40	-0.0
1,407,120	-	gppA	HEPCGN_13315	0.40	+1.4
1,407,120	-	gppA	HEPCGN_13315	0.40	+0.5
1,407,369	+	gppA	HEPCGN_13315	0.57	-0.1
1,407,369	+	gppA	HEPCGN_13315	0.57	-0.0
1,407,369	+	gppA	HEPCGN_13315	0.57	-0.7
1,407,370	-	gppA	HEPCGN_13315	0.57	+0.5
1,407,370	-	gppA	HEPCGN_13315	0.57	+0.6
1,407,409	+	gppA	HEPCGN_13315	0.60	+0.2
1,407,453	+	gppA	HEPCGN_13315	0.63	+0.4
1,407,463	-	gppA	HEPCGN_13315	0.63	+1.2
1,407,463	-	gppA	HEPCGN_13315	0.63	+1.0
1,407,480	+	gppA	HEPCGN_13315	0.65	-1.0
1,407,481	-	gppA	HEPCGN_13315	0.65	-0.3
1,407,481	-	gppA	HEPCGN_13315	0.65	-0.2
1,407,569	+	gppA	HEPCGN_13315	0.71	-0.1
1,407,569	+	gppA	HEPCGN_13315	0.71	-0.2
1,407,655	+	gppA	HEPCGN_13315	0.76	-0.1
1,407,656	-	gppA	HEPCGN_13315	0.76	+0.7
1,407,667	-	gppA	HEPCGN_13315	0.77	-0.1
1,407,667	-	gppA	HEPCGN_13315	0.77	-0.0
1,407,873	-				-0.3
1,407,940	-				-0.3
1,407,976	+				-0.4
1,407,976	+				-0.4
1,407,976	+				-0.7
1,407,976	+				-0.5
1,407,976	+				-3.3
1,407,976	+				+0.8
1,408,011	-				+0.7
1,408,053	+				-0.3
1,408,238	-				+1.0
1,408,246	+				-1.0
1,408,312	+	rep	HEPCGN_13320	0.13	-0.5
1,408,313	-	rep	HEPCGN_13320	0.13	+0.0
1,408,357	+	rep	HEPCGN_13320	0.15	+0.4
1,408,369	-	rep	HEPCGN_13320	0.16	-0.6
1,408,374	+	rep	HEPCGN_13320	0.16	-1.1
1,408,374	+	rep	HEPCGN_13320	0.16	-1.1
1,408,472	-	rep	HEPCGN_13320	0.21	-0.9
1,408,624	-	rep	HEPCGN_13320	0.28	-0.6
1,409,059	+	rep	HEPCGN_13320	0.50	-2.2
1,409,060	-	rep	HEPCGN_13320	0.50	+1.0
1,409,228	-	rep	HEPCGN_13320	0.58	+0.2
1,409,260	+	rep	HEPCGN_13320	0.60	-1.5
1,409,539	+	rep	HEPCGN_13320	0.74	-1.2
1,409,563	-	rep	HEPCGN_13320	0.75	-1.1
1,409,654	-	rep	HEPCGN_13320	0.79	+0.9
1,409,787	+	rep	HEPCGN_13320	0.86	-3.9
1,409,908	+				+0.2
1,410,073	+				+1.4
1,410,073	+				-0.5
1,410,073	+				-0.2
1,410,074	-				-0.1
1,410,074	-				+0.2
1,410,077	+				+1.9
1,410,078	-				+0.1
1,410,078	-				-0.1
1,410,078	-				-0.7
1,410,078	-				+0.4
1,410,078	-				-0.9
1,410,080	-				-0.5
1,410,254	-				+0.1
1,410,286	+				-0.5
1,410,286	+				-0.5
1,410,299	+				+0.2
1,410,300	-				+0.5
1,410,348	+	yifN	HEPCGN_13325	0.13	-1.0
1,410,348	+	yifN	HEPCGN_13325	0.13	+1.1
1,410,348	+	yifN	HEPCGN_13325	0.13	-0.6
1,410,349	-	yifN	HEPCGN_13325	0.13	-0.5
1,410,349	-	yifN	HEPCGN_13325	0.13	+0.6
1,410,349	-	yifN	HEPCGN_13325	0.13	+1.1
1,410,384	+	yifN	HEPCGN_13325	0.21	-0.3
1,410,385	-	yifN	HEPCGN_13325	0.21	+0.7
1,410,468	-	yifN	HEPCGN_13325	0.39	+1.1
1,410,482	-	yifN	HEPCGN_13325	0.42	-0.1
1,410,508	+	yifN	HEPCGN_13325	0.48	-1.2
1,410,508	+	yifN	HEPCGN_13325	0.48	-0.4
1,410,509	-	yifN	HEPCGN_13325	0.48	-0.3
1,410,546	-	yifN	HEPCGN_13325	0.57	-0.2
1,410,546	-	yifN	HEPCGN_13325	0.57	+0.2
1,410,577	+	yifN	HEPCGN_13325	0.64	-0.2
1,410,578	-	yifN	HEPCGN_13325	0.64	+0.5
1,410,642	+	yifN	HEPCGN_13325	0.78	-0.0
1,410,651	+	yifN	HEPCGN_13325	0.80	+0.8
1,410,692	-	yifN	HEPCGN_13325	0.89	+1.3
1,410,692	-	yifN	HEPCGN_13325	0.89	+0.3
1,410,692	-	yifN	HEPCGN_13325	0.89	+0.0
1,410,692	-	yifN	HEPCGN_13325	0.89	-0.5
1,410,773	+				-0.1
1,410,789	+				-0.1
1,410,845	-				+0.4
1,410,845	-				-0.6
1,410,845	-				-0.4
1,410,845	-				+0.1
1,410,845	-				+0.3
1,410,845	-				-0.2
1,410,846	+				-1.0
1,410,846	+				+0.1
1,410,846	+				+0.5
1,410,846	+				+0.1
1,410,846	+				+1.7
1,410,846	+				-0.4
1,410,846	+				+0.0
1,410,847	-				-0.2
1,410,847	-				-0.0
1,410,847	-				+1.7
1,410,847	-				-0.8
1,410,847	-				+0.2
1,410,847	-				-0.5
1,410,847	-				-0.8
1,410,927	+	ppiC	HEPCGN_13330	0.12	-0.2
1,410,927	+	ppiC	HEPCGN_13330	0.12	-0.4
1,411,042	-	ppiC	HEPCGN_13330	0.53	+0.3