Strain Fitness in Escherichia coli ECOR38 around HEPCGN_11635

Experiment: TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmalK and HEPCGN_11635 are separated by 176 nucleotidesHEPCGN_11635 and malE are separated by 92 nucleotides HEPCGN_11630: malK - maltose/maltodextrin ABC transporter ATP-binding protein MalK, at 1,067,316 to 1,068,431 malK HEPCGN_11635: HEPCGN_11635 - sugar ABC transporter, at 1,068,608 to 1,068,703 _11635 HEPCGN_11640: malE - maltose/maltodextrin ABC transporter substrate-binding protein MalE, at 1,068,796 to 1,069,986 malE Position (kb) 1068 1069Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1067.767 kb on + strand, within malKat 1067.767 kb on + strand, within malKat 1067.833 kb on - strand, within malKat 1067.866 kb on + strand, within malKat 1067.867 kb on - strand, within malKat 1067.867 kb on - strand, within malKat 1067.912 kb on + strand, within malKat 1068.172 kb on + strand, within malKat 1068.197 kb on + strand, within malKat 1068.198 kb on - strand, within malKat 1068.298 kb on - strand, within malKat 1068.420 kb on + strandat 1068.489 kb on - strandat 1068.510 kb on + strandat 1068.511 kb on - strandat 1068.636 kb on + strand, within HEPCGN_11635at 1068.701 kb on + strandat 1068.701 kb on + strandat 1068.743 kb on + strandat 1068.743 kb on + strandat 1068.744 kb on - strandat 1068.791 kb on - strandat 1068.889 kb on - strandat 1068.896 kb on + strandat 1068.897 kb on - strandat 1068.897 kb on - strandat 1068.905 kb on + strandat 1068.972 kb on + strand, within malEat 1069.051 kb on - strand, within malEat 1069.164 kb on - strand, within malEat 1069.168 kb on + strand, within malEat 1069.222 kb on + strand, within malEat 1069.223 kb on - strand, within malEat 1069.225 kb on - strand, within malEat 1069.303 kb on - strand, within malEat 1069.337 kb on - strand, within malEat 1069.372 kb on + strand, within malEat 1069.470 kb on + strand, within malEat 1069.501 kb on + strand, within malEat 1069.524 kb on + strand, within malEat 1069.524 kb on + strand, within malEat 1069.528 kb on - strand, within malEat 1069.597 kb on + strand, within malEat 1069.597 kb on + strand, within malEat 1069.597 kb on + strand, within malEat 1069.597 kb on + strand, within malEat 1069.598 kb on - strand, within malEat 1069.639 kb on - strand, within malEat 1069.672 kb on - strand, within malE

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Per-strain Table

Position Strand Gene LocusTag Fraction TP12
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1,067,767 + malK HEPCGN_11630 0.40 +2.9
1,067,767 + malK HEPCGN_11630 0.40 -0.8
1,067,833 - malK HEPCGN_11630 0.46 -0.4
1,067,866 + malK HEPCGN_11630 0.49 -1.0
1,067,867 - malK HEPCGN_11630 0.49 +0.6
1,067,867 - malK HEPCGN_11630 0.49 -0.2
1,067,912 + malK HEPCGN_11630 0.53 +0.6
1,068,172 + malK HEPCGN_11630 0.77 +0.7
1,068,197 + malK HEPCGN_11630 0.79 -0.4
1,068,198 - malK HEPCGN_11630 0.79 +0.3
1,068,298 - malK HEPCGN_11630 0.88 +0.0
1,068,420 + +0.2
1,068,489 - +0.1
1,068,510 + -0.0
1,068,511 - +0.3
1,068,636 + HEPCGN_11635 0.29 -0.7
1,068,701 + +0.9
1,068,701 + -0.2
1,068,743 + +0.6
1,068,743 + -1.8
1,068,744 - +0.7
1,068,791 - +1.5
1,068,889 - -0.3
1,068,896 + -2.3
1,068,897 - +0.5
1,068,897 - -0.3
1,068,905 + +0.4
1,068,972 + malE HEPCGN_11640 0.15 -0.3
1,069,051 - malE HEPCGN_11640 0.21 +0.4
1,069,164 - malE HEPCGN_11640 0.31 -1.0
1,069,168 + malE HEPCGN_11640 0.31 +0.4
1,069,222 + malE HEPCGN_11640 0.36 +0.4
1,069,223 - malE HEPCGN_11640 0.36 +0.1
1,069,225 - malE HEPCGN_11640 0.36 +0.6
1,069,303 - malE HEPCGN_11640 0.43 -0.2
1,069,337 - malE HEPCGN_11640 0.45 +1.0
1,069,372 + malE HEPCGN_11640 0.48 +1.0
1,069,470 + malE HEPCGN_11640 0.57 +0.4
1,069,501 + malE HEPCGN_11640 0.59 +0.5
1,069,524 + malE HEPCGN_11640 0.61 -1.4
1,069,524 + malE HEPCGN_11640 0.61 +0.8
1,069,528 - malE HEPCGN_11640 0.61 +1.0
1,069,597 + malE HEPCGN_11640 0.67 -0.2
1,069,597 + malE HEPCGN_11640 0.67 +0.5
1,069,597 + malE HEPCGN_11640 0.67 +1.0
1,069,597 + malE HEPCGN_11640 0.67 -0.4
1,069,598 - malE HEPCGN_11640 0.67 +0.7
1,069,639 - malE HEPCGN_11640 0.71 +0.4
1,069,672 - malE HEPCGN_11640 0.74 +0.3

Or see this region's nucleotide sequence