Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt malK and HEPCGN_11635 are separated by 176 nucleotides HEPCGN_11635 and malE are separated by 92 nucleotides
HEPCGN_11630: malK - maltose/maltodextrin ABC transporter ATP-binding protein MalK, at 1,067,316 to 1,068,431
malK
HEPCGN_11635: HEPCGN_11635 - sugar ABC transporter, at 1,068,608 to 1,068,703
_11635
HEPCGN_11640: malE - maltose/maltodextrin ABC transporter substrate-binding protein MalE, at 1,068,796 to 1,069,986
malE
Position (kb)
1068
1069 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1067.767 kb on + strand, within malK at 1067.767 kb on + strand, within malK at 1067.833 kb on - strand, within malK at 1067.866 kb on + strand, within malK at 1067.867 kb on - strand, within malK at 1067.867 kb on - strand, within malK at 1067.912 kb on + strand, within malK at 1068.172 kb on + strand, within malK at 1068.197 kb on + strand, within malK at 1068.198 kb on - strand, within malK at 1068.298 kb on - strand, within malK at 1068.420 kb on + strand at 1068.489 kb on - strand at 1068.510 kb on + strand at 1068.511 kb on - strand at 1068.636 kb on + strand, within HEPCGN_11635 at 1068.701 kb on + strand at 1068.701 kb on + strand at 1068.743 kb on + strand at 1068.743 kb on + strand at 1068.744 kb on - strand at 1068.791 kb on - strand at 1068.889 kb on - strand at 1068.896 kb on + strand at 1068.897 kb on - strand at 1068.897 kb on - strand at 1068.905 kb on + strand at 1068.972 kb on + strand, within malE at 1069.051 kb on - strand, within malE at 1069.164 kb on - strand, within malE at 1069.168 kb on + strand, within malE at 1069.222 kb on + strand, within malE at 1069.223 kb on - strand, within malE at 1069.225 kb on - strand, within malE at 1069.303 kb on - strand, within malE at 1069.337 kb on - strand, within malE at 1069.372 kb on + strand, within malE at 1069.470 kb on + strand, within malE at 1069.501 kb on + strand, within malE at 1069.524 kb on + strand, within malE at 1069.524 kb on + strand, within malE at 1069.528 kb on - strand, within malE at 1069.597 kb on + strand, within malE at 1069.597 kb on + strand, within malE at 1069.597 kb on + strand, within malE at 1069.597 kb on + strand, within malE at 1069.598 kb on - strand, within malE at 1069.639 kb on - strand, within malE at 1069.672 kb on - strand, within malE
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 1,067,767 + malK HEPCGN_11630 0.40 +2.9 1,067,767 + malK HEPCGN_11630 0.40 -0.8 1,067,833 - malK HEPCGN_11630 0.46 -0.4 1,067,866 + malK HEPCGN_11630 0.49 -1.0 1,067,867 - malK HEPCGN_11630 0.49 +0.6 1,067,867 - malK HEPCGN_11630 0.49 -0.2 1,067,912 + malK HEPCGN_11630 0.53 +0.6 1,068,172 + malK HEPCGN_11630 0.77 +0.7 1,068,197 + malK HEPCGN_11630 0.79 -0.4 1,068,198 - malK HEPCGN_11630 0.79 +0.3 1,068,298 - malK HEPCGN_11630 0.88 +0.0 1,068,420 + +0.2 1,068,489 - +0.1 1,068,510 + -0.0 1,068,511 - +0.3 1,068,636 + HEPCGN_11635 0.29 -0.7 1,068,701 + +0.9 1,068,701 + -0.2 1,068,743 + +0.6 1,068,743 + -1.8 1,068,744 - +0.7 1,068,791 - +1.5 1,068,889 - -0.3 1,068,896 + -2.3 1,068,897 - +0.5 1,068,897 - -0.3 1,068,905 + +0.4 1,068,972 + malE HEPCGN_11640 0.15 -0.3 1,069,051 - malE HEPCGN_11640 0.21 +0.4 1,069,164 - malE HEPCGN_11640 0.31 -1.0 1,069,168 + malE HEPCGN_11640 0.31 +0.4 1,069,222 + malE HEPCGN_11640 0.36 +0.4 1,069,223 - malE HEPCGN_11640 0.36 +0.1 1,069,225 - malE HEPCGN_11640 0.36 +0.6 1,069,303 - malE HEPCGN_11640 0.43 -0.2 1,069,337 - malE HEPCGN_11640 0.45 +1.0 1,069,372 + malE HEPCGN_11640 0.48 +1.0 1,069,470 + malE HEPCGN_11640 0.57 +0.4 1,069,501 + malE HEPCGN_11640 0.59 +0.5 1,069,524 + malE HEPCGN_11640 0.61 -1.4 1,069,524 + malE HEPCGN_11640 0.61 +0.8 1,069,528 - malE HEPCGN_11640 0.61 +1.0 1,069,597 + malE HEPCGN_11640 0.67 -0.2 1,069,597 + malE HEPCGN_11640 0.67 +0.5 1,069,597 + malE HEPCGN_11640 0.67 +1.0 1,069,597 + malE HEPCGN_11640 0.67 -0.4 1,069,598 - malE HEPCGN_11640 0.67 +0.7 1,069,639 - malE HEPCGN_11640 0.71 +0.4 1,069,672 - malE HEPCGN_11640 0.74 +0.3
Or see this region's nucleotide sequence