Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rnr and nsrR are separated by 38 nucleotides nsrR and purA are separated by 204 nucleotides purA and yjeT are separated by 103 nucleotides yjeT and hflC are separated by 81 nucleotides
HEPCGN_10450: rnr - ribonuclease R, at 830,965 to 833,406
rnr
HEPCGN_10455: nsrR - nitric oxide-sensing transcriptional repressor NsrR, at 833,445 to 833,870
nsrR
HEPCGN_10460: purA - adenylosuccinate synthase, at 834,075 to 835,373
purA
HEPCGN_10465: yjeT - Uncharacterized protein YjeT, at 835,477 to 835,674
yjeT
HEPCGN_10470: hflC - protease modulator HflC, at 835,756 to 836,760
hflC
Position (kb) 834
835
836 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 833.081 kb on + strand, within rnr at 833.082 kb on - strand, within rnr at 833.082 kb on - strand, within rnr at 833.094 kb on + strand, within rnr at 833.145 kb on + strand, within rnr at 833.146 kb on - strand, within rnr at 833.281 kb on + strand at 833.350 kb on - strand at 833.466 kb on - strand at 833.466 kb on - strand at 833.506 kb on + strand, within nsrR at 833.507 kb on - strand, within nsrR at 833.507 kb on - strand, within nsrR at 833.507 kb on - strand, within nsrR at 833.510 kb on + strand, within nsrR at 833.576 kb on + strand, within nsrR at 833.576 kb on + strand, within nsrR at 833.576 kb on + strand, within nsrR at 833.576 kb on + strand, within nsrR at 833.576 kb on + strand, within nsrR at 833.576 kb on + strand, within nsrR at 833.577 kb on - strand, within nsrR at 833.577 kb on - strand, within nsrR at 833.645 kb on + strand, within nsrR at 833.645 kb on + strand, within nsrR at 833.646 kb on - strand, within nsrR at 833.646 kb on - strand, within nsrR at 833.646 kb on - strand, within nsrR at 833.723 kb on + strand, within nsrR at 833.748 kb on - strand, within nsrR at 833.748 kb on - strand, within nsrR at 833.790 kb on - strand, within nsrR at 833.825 kb on - strand, within nsrR at 833.825 kb on - strand, within nsrR at 833.838 kb on + strand at 833.838 kb on + strand at 833.839 kb on - strand at 833.839 kb on - strand at 833.901 kb on + strand at 833.907 kb on + strand at 833.908 kb on - strand at 833.910 kb on - strand at 833.910 kb on - strand at 833.910 kb on - strand at 833.910 kb on - strand at 833.981 kb on + strand at 833.982 kb on - strand at 834.001 kb on + strand at 834.002 kb on - strand at 834.027 kb on - strand at 834.027 kb on - strand at 834.038 kb on - strand at 834.054 kb on + strand at 834.055 kb on - strand at 834.178 kb on + strand at 834.178 kb on + strand at 834.178 kb on + strand at 834.179 kb on - strand at 834.179 kb on - strand at 834.268 kb on - strand, within purA at 834.303 kb on - strand, within purA at 834.470 kb on + strand, within purA at 834.471 kb on - strand, within purA at 834.565 kb on + strand, within purA at 834.566 kb on - strand, within purA at 834.566 kb on - strand, within purA at 834.589 kb on + strand, within purA at 834.657 kb on + strand, within purA at 834.658 kb on - strand, within purA at 834.662 kb on - strand, within purA at 834.668 kb on - strand, within purA at 834.773 kb on + strand, within purA at 834.773 kb on + strand, within purA at 834.774 kb on - strand, within purA at 834.844 kb on + strand, within purA at 834.847 kb on + strand, within purA at 834.851 kb on + strand, within purA at 834.852 kb on - strand, within purA at 834.871 kb on + strand, within purA at 834.871 kb on + strand, within purA at 834.953 kb on + strand, within purA at 834.954 kb on - strand, within purA at 834.961 kb on + strand, within purA at 834.961 kb on + strand, within purA at 834.974 kb on + strand, within purA at 835.180 kb on - strand, within purA at 835.197 kb on - strand, within purA at 835.208 kb on + strand, within purA at 835.247 kb on + strand at 835.279 kb on - strand at 835.279 kb on - strand at 835.279 kb on - strand at 835.279 kb on - strand at 835.285 kb on + strand at 835.286 kb on - strand at 835.286 kb on - strand at 835.286 kb on - strand at 835.286 kb on - strand at 835.286 kb on - strand at 835.286 kb on - strand at 835.286 kb on - strand at 835.320 kb on - strand at 835.325 kb on + strand at 835.502 kb on + strand, within yjeT at 835.502 kb on + strand, within yjeT at 835.502 kb on + strand, within yjeT at 835.502 kb on + strand, within yjeT at 835.502 kb on + strand, within yjeT at 835.687 kb on + strand at 835.752 kb on + strand at 835.753 kb on - strand at 835.754 kb on + strand at 835.754 kb on + strand at 835.755 kb on - strand at 835.757 kb on + strand at 835.854 kb on - strand at 835.854 kb on - strand at 836.091 kb on - strand, within hflC at 836.091 kb on - strand, within hflC at 836.131 kb on - strand, within hflC at 836.263 kb on - strand, within hflC at 836.263 kb on - strand, within hflC at 836.277 kb on + strand, within hflC
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 833,081 + rnr HEPCGN_10450 0.87 -0.6 833,082 - rnr HEPCGN_10450 0.87 -0.4 833,082 - rnr HEPCGN_10450 0.87 -0.6 833,094 + rnr HEPCGN_10450 0.87 -0.9 833,145 + rnr HEPCGN_10450 0.89 +0.2 833,146 - rnr HEPCGN_10450 0.89 +0.6 833,281 + +0.5 833,350 - -0.0 833,466 - +0.0 833,466 - -0.2 833,506 + nsrR HEPCGN_10455 0.14 -0.1 833,507 - nsrR HEPCGN_10455 0.15 +0.2 833,507 - nsrR HEPCGN_10455 0.15 -0.9 833,507 - nsrR HEPCGN_10455 0.15 -1.8 833,510 + nsrR HEPCGN_10455 0.15 -0.7 833,576 + nsrR HEPCGN_10455 0.31 -0.6 833,576 + nsrR HEPCGN_10455 0.31 -0.6 833,576 + nsrR HEPCGN_10455 0.31 -1.9 833,576 + nsrR HEPCGN_10455 0.31 +0.4 833,576 + nsrR HEPCGN_10455 0.31 -1.2 833,576 + nsrR HEPCGN_10455 0.31 -1.9 833,577 - nsrR HEPCGN_10455 0.31 -0.1 833,577 - nsrR HEPCGN_10455 0.31 +0.2 833,645 + nsrR HEPCGN_10455 0.47 +0.6 833,645 + nsrR HEPCGN_10455 0.47 -0.1 833,646 - nsrR HEPCGN_10455 0.47 -2.5 833,646 - nsrR HEPCGN_10455 0.47 -0.3 833,646 - nsrR HEPCGN_10455 0.47 -2.5 833,723 + nsrR HEPCGN_10455 0.65 +0.5 833,748 - nsrR HEPCGN_10455 0.71 -0.8 833,748 - nsrR HEPCGN_10455 0.71 -0.6 833,790 - nsrR HEPCGN_10455 0.81 -0.7 833,825 - nsrR HEPCGN_10455 0.89 -1.9 833,825 - nsrR HEPCGN_10455 0.89 +0.0 833,838 + -1.7 833,838 + -0.7 833,839 - -0.4 833,839 - -0.8 833,901 + -0.8 833,907 + -0.3 833,908 - -0.5 833,910 - -1.1 833,910 - +0.6 833,910 - -0.2 833,910 - +0.1 833,981 + +0.6 833,982 - -0.2 834,001 + -0.3 834,002 - +0.2 834,027 - -0.2 834,027 - +0.1 834,038 - +0.4 834,054 + +0.1 834,055 - -0.1 834,178 + -2.6 834,178 + -0.6 834,178 + -1.3 834,179 - +1.5 834,179 - -0.3 834,268 - purA HEPCGN_10460 0.15 -0.9 834,303 - purA HEPCGN_10460 0.18 -2.4 834,470 + purA HEPCGN_10460 0.30 -1.5 834,471 - purA HEPCGN_10460 0.30 -2.3 834,565 + purA HEPCGN_10460 0.38 -2.0 834,566 - purA HEPCGN_10460 0.38 -1.4 834,566 - purA HEPCGN_10460 0.38 -2.3 834,589 + purA HEPCGN_10460 0.40 -1.2 834,657 + purA HEPCGN_10460 0.45 -1.4 834,658 - purA HEPCGN_10460 0.45 +0.0 834,662 - purA HEPCGN_10460 0.45 -0.1 834,668 - purA HEPCGN_10460 0.46 -2.8 834,773 + purA HEPCGN_10460 0.54 -1.1 834,773 + purA HEPCGN_10460 0.54 -2.6 834,774 - purA HEPCGN_10460 0.54 +0.0 834,844 + purA HEPCGN_10460 0.59 +0.9 834,847 + purA HEPCGN_10460 0.59 -2.4 834,851 + purA HEPCGN_10460 0.60 +0.6 834,852 - purA HEPCGN_10460 0.60 -1.0 834,871 + purA HEPCGN_10460 0.61 +0.1 834,871 + purA HEPCGN_10460 0.61 -1.0 834,953 + purA HEPCGN_10460 0.68 -0.6 834,954 - purA HEPCGN_10460 0.68 +2.3 834,961 + purA HEPCGN_10460 0.68 -0.3 834,961 + purA HEPCGN_10460 0.68 -0.7 834,974 + purA HEPCGN_10460 0.69 -1.7 835,180 - purA HEPCGN_10460 0.85 +2.3 835,197 - purA HEPCGN_10460 0.86 -1.9 835,208 + purA HEPCGN_10460 0.87 -0.8 835,247 + +1.3 835,279 - -0.4 835,279 - -0.4 835,279 - -3.0 835,279 - -0.9 835,285 + -1.4 835,286 - -0.4 835,286 - +0.5 835,286 - +0.3 835,286 - -1.8 835,286 - -0.5 835,286 - -0.1 835,286 - -1.1 835,320 - -1.1 835,325 + -0.9 835,502 + yjeT HEPCGN_10465 0.13 -1.2 835,502 + yjeT HEPCGN_10465 0.13 -0.5 835,502 + yjeT HEPCGN_10465 0.13 +0.0 835,502 + yjeT HEPCGN_10465 0.13 +0.7 835,502 + yjeT HEPCGN_10465 0.13 +0.0 835,687 + +0.1 835,752 + -0.4 835,753 - -0.0 835,754 + -0.5 835,754 + +0.9 835,755 - +0.1 835,757 + -0.2 835,854 - -0.7 835,854 - -0.9 836,091 - hflC HEPCGN_10470 0.33 -0.4 836,091 - hflC HEPCGN_10470 0.33 +0.1 836,131 - hflC HEPCGN_10470 0.37 +0.1 836,263 - hflC HEPCGN_10470 0.50 -1.1 836,263 - hflC HEPCGN_10470 0.50 -1.2 836,277 + hflC HEPCGN_10470 0.52 +1.2
Or see this region's nucleotide sequence