Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrdD and nrdG are separated by 189 nucleotides nrdG and relB are separated by 0 nucleotides relB and cybC are separated by 190 nucleotides cybC and pmbA are separated by 183 nucleotides
HEPCGN_10100: nrdD - anaerobic ribonucleoside-triphosphate reductase, at 767,512 to 769,650
nrdD
HEPCGN_10110: nrdG - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 769,840 to 770,304
nrdG
HEPCGN_10115: relB - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 770,305 to 770,544
relB
HEPCGN_10120: cybC - cytochrome b562, at 770,735 to 771,121
cybC
HEPCGN_10125: pmbA - metalloprotease PmbA, at 771,305 to 772,657
pmbA
Position (kb) 770
771 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 769.406 kb on + strand, within nrdD at 769.412 kb on - strand, within nrdD at 769.425 kb on + strand, within nrdD at 769.426 kb on - strand, within nrdD at 769.559 kb on + strand at 769.643 kb on + strand at 769.644 kb on - strand at 769.811 kb on - strand at 769.847 kb on - strand at 769.855 kb on + strand at 769.859 kb on - strand at 769.941 kb on + strand, within nrdG at 769.981 kb on - strand, within nrdG at 770.106 kb on - strand, within nrdG at 770.160 kb on + strand, within nrdG at 770.464 kb on - strand, within relB at 770.472 kb on + strand, within relB at 770.532 kb on + strand at 770.587 kb on + strand at 770.587 kb on + strand at 770.588 kb on - strand at 770.592 kb on - strand at 770.650 kb on - strand at 770.742 kb on + strand at 770.743 kb on - strand at 770.809 kb on + strand, within cybC at 771.104 kb on + strand at 771.104 kb on + strand at 771.105 kb on - strand at 771.115 kb on + strand at 771.116 kb on - strand at 771.116 kb on - strand at 771.176 kb on + strand at 771.353 kb on + strand at 771.353 kb on + strand at 771.354 kb on - strand at 771.354 kb on - strand at 771.354 kb on - strand at 771.354 kb on - strand at 771.355 kb on + strand at 771.355 kb on + strand at 771.356 kb on - strand at 771.358 kb on + strand at 771.406 kb on + strand at 771.406 kb on + strand at 771.414 kb on - strand at 771.496 kb on - strand, within pmbA
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 769,406 + nrdD HEPCGN_10100 0.89 +0.3 769,412 - nrdD HEPCGN_10100 0.89 -0.7 769,425 + nrdD HEPCGN_10100 0.89 +0.0 769,426 - nrdD HEPCGN_10100 0.89 +0.6 769,559 + +0.1 769,643 + +0.8 769,644 - +0.5 769,811 - -0.1 769,847 - +0.4 769,855 + -0.8 769,859 - +0.3 769,941 + nrdG HEPCGN_10110 0.22 -0.3 769,981 - nrdG HEPCGN_10110 0.30 +0.1 770,106 - nrdG HEPCGN_10110 0.57 -0.9 770,160 + nrdG HEPCGN_10110 0.69 -0.5 770,464 - relB HEPCGN_10115 0.66 -1.0 770,472 + relB HEPCGN_10115 0.70 -0.3 770,532 + +1.1 770,587 + +0.4 770,587 + +0.9 770,588 - -1.0 770,592 - -0.4 770,650 - +0.6 770,742 + +0.1 770,743 - +0.7 770,809 + cybC HEPCGN_10120 0.19 -0.6 771,104 + -2.9 771,104 + +1.0 771,105 - -0.7 771,115 + +0.7 771,116 - -0.2 771,116 - +0.5 771,176 + +0.2 771,353 + +0.3 771,353 + -0.1 771,354 - +0.2 771,354 - -0.5 771,354 - +0.5 771,354 - +0.2 771,355 + -0.3 771,355 + +0.1 771,356 - -0.2 771,358 + -0.1 771,406 + +1.1 771,406 + -1.9 771,414 - +0.3 771,496 - pmbA HEPCGN_10125 0.14 -0.2
Or see this region's nucleotide sequence