Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_10010 and yjgM are separated by 192 nucleotides yjgM and rraB are separated by 176 nucleotides rraB and argF are separated by 161 nucleotides
HEPCGN_10010: HEPCGN_10010 - DUF898 domain-containing protein, at 747,477 to 748,664
_10010
HEPCGN_10015: yjgM - Uncharacterized N-acetyltransferase YjgM, at 748,857 to 749,360
yjgM
HEPCGN_10020: rraB - ribonuclease E inhibitor RraB, at 749,537 to 749,953
rraB
HEPCGN_10025: argF - ornithine carbamoyltransferase, at 750,115 to 751,119
argF
Position (kb) 749
750 Strain fitness (log2 ratio) -2
-1
0
1
2 at 748.669 kb on + strand at 748.799 kb on + strand at 748.812 kb on + strand at 748.826 kb on - strand at 748.852 kb on - strand at 748.852 kb on - strand at 748.899 kb on - strand at 748.978 kb on - strand, within yjgM at 748.978 kb on - strand, within yjgM at 749.011 kb on - strand, within yjgM at 749.019 kb on + strand, within yjgM at 749.019 kb on + strand, within yjgM at 749.019 kb on + strand, within yjgM at 749.020 kb on - strand, within yjgM at 749.020 kb on - strand, within yjgM at 749.020 kb on - strand, within yjgM at 749.020 kb on - strand, within yjgM at 749.041 kb on - strand, within yjgM at 749.136 kb on + strand, within yjgM at 749.301 kb on + strand, within yjgM at 749.435 kb on + strand at 749.435 kb on + strand at 749.436 kb on - strand at 749.436 kb on - strand at 749.436 kb on - strand at 749.478 kb on + strand at 749.478 kb on + strand at 749.478 kb on + strand at 749.492 kb on - strand at 749.539 kb on - strand at 749.613 kb on + strand, within rraB at 749.613 kb on + strand, within rraB at 749.613 kb on + strand, within rraB at 749.631 kb on + strand, within rraB at 749.631 kb on + strand, within rraB at 749.859 kb on + strand, within rraB at 749.860 kb on - strand, within rraB at 749.982 kb on - strand at 750.114 kb on + strand at 750.115 kb on - strand at 750.115 kb on - strand at 750.115 kb on - strand at 750.132 kb on + strand at 750.316 kb on + strand, within argF at 750.316 kb on + strand, within argF at 750.316 kb on + strand, within argF at 750.340 kb on + strand, within argF at 750.416 kb on - strand, within argF at 750.416 kb on - strand, within argF at 750.416 kb on - strand, within argF at 750.799 kb on - strand, within argF at 750.803 kb on - strand, within argF at 750.803 kb on - strand, within argF at 750.803 kb on - strand, within argF
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 748,669 + -0.1 748,799 + +0.0 748,812 + -0.1 748,826 - -0.6 748,852 - -0.1 748,852 - -0.6 748,899 - -0.3 748,978 - yjgM HEPCGN_10015 0.24 +0.2 748,978 - yjgM HEPCGN_10015 0.24 -0.5 749,011 - yjgM HEPCGN_10015 0.31 -2.5 749,019 + yjgM HEPCGN_10015 0.32 -0.0 749,019 + yjgM HEPCGN_10015 0.32 -2.0 749,019 + yjgM HEPCGN_10015 0.32 -0.2 749,020 - yjgM HEPCGN_10015 0.32 -1.2 749,020 - yjgM HEPCGN_10015 0.32 +0.5 749,020 - yjgM HEPCGN_10015 0.32 +0.9 749,020 - yjgM HEPCGN_10015 0.32 +1.1 749,041 - yjgM HEPCGN_10015 0.37 -0.6 749,136 + yjgM HEPCGN_10015 0.55 +1.3 749,301 + yjgM HEPCGN_10015 0.88 +0.1 749,435 + +1.8 749,435 + +0.2 749,436 - +0.6 749,436 - +0.2 749,436 - -0.1 749,478 + -1.1 749,478 + -0.2 749,478 + -0.0 749,492 - +0.4 749,539 - +0.7 749,613 + rraB HEPCGN_10020 0.18 -0.5 749,613 + rraB HEPCGN_10020 0.18 -0.3 749,613 + rraB HEPCGN_10020 0.18 -2.0 749,631 + rraB HEPCGN_10020 0.23 -0.7 749,631 + rraB HEPCGN_10020 0.23 -0.6 749,859 + rraB HEPCGN_10020 0.77 +0.4 749,860 - rraB HEPCGN_10020 0.77 -1.0 749,982 - -0.2 750,114 + -0.1 750,115 - -0.4 750,115 - +0.5 750,115 - +1.0 750,132 + +1.0 750,316 + argF HEPCGN_10025 0.20 +0.9 750,316 + argF HEPCGN_10025 0.20 +0.7 750,316 + argF HEPCGN_10025 0.20 -0.8 750,340 + argF HEPCGN_10025 0.22 -0.5 750,416 - argF HEPCGN_10025 0.30 -1.9 750,416 - argF HEPCGN_10025 0.30 +0.1 750,416 - argF HEPCGN_10025 0.30 +0.0 750,799 - argF HEPCGN_10025 0.68 +0.1 750,803 - argF HEPCGN_10025 0.68 +0.1 750,803 - argF HEPCGN_10025 0.68 -0.8 750,803 - argF HEPCGN_10025 0.68 -0.9
Or see this region's nucleotide sequence