Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aceF and aceE are separated by 14 nucleotides aceE and pdhR are separated by 160 nucleotides
HEPCGN_08475: aceF - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 434,927 to 436,819
aceF
HEPCGN_08480: aceE - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 436,834 to 439,497
aceE
HEPCGN_08490: pdhR - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 439,658 to 440,422
pdhR
Position (kb) 436
437
438
439
440 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 435.843 kb on + strand, within aceF at 436.682 kb on + strand at 436.683 kb on - strand at 436.710 kb on - strand at 436.710 kb on - strand at 436.956 kb on - strand at 436.956 kb on - strand at 437.036 kb on + strand at 437.055 kb on - strand at 437.055 kb on - strand at 437.085 kb on + strand at 437.085 kb on + strand at 437.094 kb on + strand at 437.226 kb on + strand, within aceE at 437.228 kb on + strand, within aceE at 437.229 kb on - strand, within aceE at 437.408 kb on + strand, within aceE at 437.424 kb on + strand, within aceE at 437.432 kb on + strand, within aceE at 437.433 kb on - strand, within aceE at 437.433 kb on - strand, within aceE at 437.436 kb on - strand, within aceE at 437.436 kb on - strand, within aceE at 437.438 kb on + strand, within aceE at 437.463 kb on - strand, within aceE at 437.463 kb on - strand, within aceE at 437.466 kb on + strand, within aceE at 437.466 kb on + strand, within aceE at 437.466 kb on + strand, within aceE at 437.466 kb on + strand, within aceE at 437.467 kb on - strand, within aceE at 437.523 kb on - strand, within aceE at 437.530 kb on - strand, within aceE at 437.604 kb on + strand, within aceE at 437.700 kb on - strand, within aceE at 437.708 kb on + strand, within aceE at 437.708 kb on + strand, within aceE at 437.828 kb on + strand, within aceE at 437.831 kb on + strand, within aceE at 437.887 kb on - strand, within aceE at 438.015 kb on + strand, within aceE at 438.146 kb on + strand, within aceE at 438.151 kb on - strand, within aceE at 438.151 kb on - strand, within aceE at 438.182 kb on + strand, within aceE at 438.530 kb on + strand, within aceE at 438.822 kb on - strand, within aceE at 438.867 kb on - strand, within aceE at 438.919 kb on + strand, within aceE at 438.966 kb on - strand, within aceE at 439.006 kb on - strand, within aceE at 439.145 kb on + strand, within aceE at 439.146 kb on - strand, within aceE at 439.510 kb on - strand at 439.510 kb on - strand at 439.518 kb on - strand at 439.659 kb on + strand at 439.686 kb on - strand at 439.826 kb on - strand, within pdhR at 440.022 kb on - strand, within pdhR at 440.069 kb on - strand, within pdhR at 440.069 kb on - strand, within pdhR at 440.086 kb on - strand, within pdhR at 440.415 kb on + strand at 440.415 kb on + strand at 440.492 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 435,843 + aceF HEPCGN_08475 0.48 +1.5 436,682 + -1.1 436,683 - -1.2 436,710 - -0.7 436,710 - -0.4 436,956 - +0.2 436,956 - +0.9 437,036 + +1.2 437,055 - +1.8 437,055 - +0.2 437,085 + -1.1 437,085 + +1.5 437,094 + +2.2 437,226 + aceE HEPCGN_08480 0.15 +2.2 437,228 + aceE HEPCGN_08480 0.15 -2.6 437,229 - aceE HEPCGN_08480 0.15 -1.2 437,408 + aceE HEPCGN_08480 0.22 +1.2 437,424 + aceE HEPCGN_08480 0.22 +2.8 437,432 + aceE HEPCGN_08480 0.22 +1.2 437,433 - aceE HEPCGN_08480 0.22 +0.8 437,433 - aceE HEPCGN_08480 0.22 -1.4 437,436 - aceE HEPCGN_08480 0.23 +0.2 437,436 - aceE HEPCGN_08480 0.23 -0.8 437,438 + aceE HEPCGN_08480 0.23 -0.2 437,463 - aceE HEPCGN_08480 0.24 +0.2 437,463 - aceE HEPCGN_08480 0.24 +0.4 437,466 + aceE HEPCGN_08480 0.24 -1.1 437,466 + aceE HEPCGN_08480 0.24 +2.8 437,466 + aceE HEPCGN_08480 0.24 +0.2 437,466 + aceE HEPCGN_08480 0.24 -1.1 437,467 - aceE HEPCGN_08480 0.24 -0.7 437,523 - aceE HEPCGN_08480 0.26 +3.2 437,530 - aceE HEPCGN_08480 0.26 -0.4 437,604 + aceE HEPCGN_08480 0.29 -1.5 437,700 - aceE HEPCGN_08480 0.33 +1.2 437,708 + aceE HEPCGN_08480 0.33 +0.8 437,708 + aceE HEPCGN_08480 0.33 +2.3 437,828 + aceE HEPCGN_08480 0.37 -2.1 437,831 + aceE HEPCGN_08480 0.37 +1.3 437,887 - aceE HEPCGN_08480 0.40 +0.8 438,015 + aceE HEPCGN_08480 0.44 -0.2 438,146 + aceE HEPCGN_08480 0.49 -0.2 438,151 - aceE HEPCGN_08480 0.49 +2.8 438,151 - aceE HEPCGN_08480 0.49 +0.8 438,182 + aceE HEPCGN_08480 0.51 +0.4 438,530 + aceE HEPCGN_08480 0.64 -0.2 438,822 - aceE HEPCGN_08480 0.75 -0.9 438,867 - aceE HEPCGN_08480 0.76 -1.3 438,919 + aceE HEPCGN_08480 0.78 +1.2 438,966 - aceE HEPCGN_08480 0.80 -0.4 439,006 - aceE HEPCGN_08480 0.82 +1.2 439,145 + aceE HEPCGN_08480 0.87 +1.2 439,146 - aceE HEPCGN_08480 0.87 -0.7 439,510 - -1.2 439,510 - +0.1 439,518 - -1.8 439,659 + +1.2 439,686 - +0.2 439,826 - pdhR HEPCGN_08490 0.22 -0.9 440,022 - pdhR HEPCGN_08490 0.48 -0.5 440,069 - pdhR HEPCGN_08490 0.54 -0.1 440,069 - pdhR HEPCGN_08490 0.54 +0.6 440,086 - pdhR HEPCGN_08490 0.56 +0.2 440,415 + -0.2 440,415 + -0.1 440,492 - -1.6
Or see this region's nucleotide sequence