Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yniA and ydiZ are separated by 105 nucleotides ydiZ and pfkB are separated by 100 nucleotides pfkB and ydiY are separated by 286 nucleotides
HEPCGN_05390: yniA - putative ketoamine kinase YniA, at 952,669 to 953,529
yniA
HEPCGN_05395: ydiZ - Uncharacterized protein YdiZ, at 953,635 to 953,925
ydiZ
HEPCGN_05400: pfkB - 6-phosphofructokinase II, at 954,026 to 954,955
pfkB
HEPCGN_05405: ydiY - Uncharacterized protein YdiY, at 955,242 to 956,000
ydiY
Position (kb) 954
955 Strain fitness (log2 ratio) -2
-1
0
1
2 at 953.256 kb on - strand, within yniA at 953.256 kb on - strand, within yniA at 953.256 kb on - strand, within yniA at 953.466 kb on + strand at 953.598 kb on - strand at 953.757 kb on + strand, within ydiZ at 953.758 kb on - strand, within ydiZ at 953.791 kb on - strand, within ydiZ at 953.791 kb on - strand, within ydiZ at 953.791 kb on - strand, within ydiZ at 953.840 kb on + strand, within ydiZ at 953.841 kb on - strand, within ydiZ at 953.900 kb on + strand at 953.901 kb on - strand at 953.925 kb on + strand at 953.941 kb on + strand at 954.253 kb on + strand, within pfkB at 954.415 kb on + strand, within pfkB at 954.671 kb on + strand, within pfkB at 954.671 kb on + strand, within pfkB at 954.671 kb on + strand, within pfkB at 954.671 kb on + strand, within pfkB at 954.671 kb on + strand, within pfkB at 954.672 kb on - strand, within pfkB at 954.708 kb on - strand, within pfkB at 954.708 kb on - strand, within pfkB at 954.946 kb on + strand at 954.946 kb on + strand at 954.946 kb on + strand at 954.947 kb on - strand at 954.968 kb on + strand at 954.969 kb on - strand at 955.020 kb on + strand at 955.027 kb on + strand at 955.056 kb on + strand at 955.057 kb on - strand at 955.060 kb on + strand at 955.226 kb on + strand at 955.226 kb on + strand at 955.226 kb on + strand at 955.274 kb on + strand at 955.393 kb on - strand, within ydiY at 955.508 kb on + strand, within ydiY at 955.565 kb on - strand, within ydiY at 955.572 kb on + strand, within ydiY at 955.572 kb on + strand, within ydiY at 955.579 kb on - strand, within ydiY at 955.582 kb on + strand, within ydiY at 955.615 kb on - strand, within ydiY at 955.720 kb on - strand, within ydiY at 955.729 kb on - strand, within ydiY at 955.731 kb on - strand, within ydiY at 955.779 kb on + strand, within ydiY at 955.806 kb on - strand, within ydiY at 955.880 kb on + strand, within ydiY
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 953,256 - yniA HEPCGN_05390 0.68 +0.4 953,256 - yniA HEPCGN_05390 0.68 +0.0 953,256 - yniA HEPCGN_05390 0.68 -0.4 953,466 + +1.0 953,598 - -0.1 953,757 + ydiZ HEPCGN_05395 0.42 -0.4 953,758 - ydiZ HEPCGN_05395 0.42 -0.1 953,791 - ydiZ HEPCGN_05395 0.54 -0.5 953,791 - ydiZ HEPCGN_05395 0.54 -1.0 953,791 - ydiZ HEPCGN_05395 0.54 -0.6 953,840 + ydiZ HEPCGN_05395 0.70 -0.3 953,841 - ydiZ HEPCGN_05395 0.71 -0.1 953,900 + +0.7 953,901 - +0.0 953,925 + +0.1 953,941 + +0.7 954,253 + pfkB HEPCGN_05400 0.24 +0.4 954,415 + pfkB HEPCGN_05400 0.42 -2.1 954,671 + pfkB HEPCGN_05400 0.69 +1.8 954,671 + pfkB HEPCGN_05400 0.69 -2.0 954,671 + pfkB HEPCGN_05400 0.69 -0.1 954,671 + pfkB HEPCGN_05400 0.69 -1.3 954,671 + pfkB HEPCGN_05400 0.69 -1.2 954,672 - pfkB HEPCGN_05400 0.69 -1.0 954,708 - pfkB HEPCGN_05400 0.73 -0.8 954,708 - pfkB HEPCGN_05400 0.73 +0.8 954,946 + +0.3 954,946 + -0.4 954,946 + +0.5 954,947 - +0.1 954,968 + -0.1 954,969 - +1.3 955,020 + +1.0 955,027 + +0.5 955,056 + -0.9 955,057 - -0.8 955,060 + -1.8 955,226 + -0.1 955,226 + -0.6 955,226 + +0.6 955,274 + +1.5 955,393 - ydiY HEPCGN_05405 0.20 +0.7 955,508 + ydiY HEPCGN_05405 0.35 +0.4 955,565 - ydiY HEPCGN_05405 0.43 +0.0 955,572 + ydiY HEPCGN_05405 0.43 -0.7 955,572 + ydiY HEPCGN_05405 0.43 -0.1 955,579 - ydiY HEPCGN_05405 0.44 +0.1 955,582 + ydiY HEPCGN_05405 0.45 -0.3 955,615 - ydiY HEPCGN_05405 0.49 -0.2 955,720 - ydiY HEPCGN_05405 0.63 -2.0 955,729 - ydiY HEPCGN_05405 0.64 -0.4 955,731 - ydiY HEPCGN_05405 0.64 -0.3 955,779 + ydiY HEPCGN_05405 0.71 +0.4 955,806 - ydiY HEPCGN_05405 0.74 -2.3 955,880 + ydiY HEPCGN_05405 0.84 +0.1
Or see this region's nucleotide sequence