Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hexR and HEPCGN_04735 are separated by 22 nucleotides HEPCGN_04735 and zwf are separated by 164 nucleotides zwf and edd are separated by 234 nucleotides
HEPCGN_04730: hexR - DNA-binding transcriptional regulator HexR, at 825,288 to 826,157
hexR
HEPCGN_04735: HEPCGN_04735 - hypothetical protein, at 826,180 to 826,329
_04735
HEPCGN_04740: zwf - glucose-6-phosphate dehydrogenase, at 826,494 to 827,969
zwf
HEPCGN_04745: edd - phosphogluconate dehydratase, at 828,204 to 830,015
edd
Position (kb) 826
827
828 Strain fitness (log2 ratio) -1
0
1
2 at 825.544 kb on - strand, within hexR at 825.549 kb on - strand, within hexR at 825.605 kb on + strand, within hexR at 825.648 kb on - strand, within hexR at 825.648 kb on - strand, within hexR at 825.671 kb on + strand, within hexR at 825.699 kb on - strand, within hexR at 825.713 kb on + strand, within hexR at 825.750 kb on + strand, within hexR at 825.920 kb on - strand, within hexR at 826.229 kb on + strand, within HEPCGN_04735 at 826.229 kb on + strand, within HEPCGN_04735 at 826.230 kb on - strand, within HEPCGN_04735 at 826.288 kb on - strand, within HEPCGN_04735 at 826.413 kb on - strand at 826.421 kb on + strand at 826.422 kb on - strand at 826.449 kb on - strand at 826.451 kb on - strand at 826.476 kb on + strand at 826.477 kb on - strand at 826.482 kb on - strand at 826.655 kb on + strand, within zwf at 826.665 kb on + strand, within zwf at 826.666 kb on - strand, within zwf at 826.839 kb on + strand, within zwf at 826.921 kb on + strand, within zwf at 827.010 kb on + strand, within zwf at 827.355 kb on + strand, within zwf at 827.358 kb on - strand, within zwf at 827.493 kb on + strand, within zwf at 827.716 kb on - strand, within zwf at 827.729 kb on + strand, within zwf at 827.754 kb on + strand, within zwf at 827.787 kb on - strand, within zwf at 827.803 kb on + strand, within zwf at 827.804 kb on - strand, within zwf at 827.970 kb on + strand at 827.971 kb on - strand at 827.971 kb on - strand at 828.110 kb on - strand at 828.283 kb on + strand at 828.423 kb on + strand, within edd at 828.425 kb on + strand, within edd at 828.629 kb on + strand, within edd at 828.780 kb on - strand, within edd at 828.792 kb on + strand, within edd at 828.792 kb on + strand, within edd at 828.804 kb on - strand, within edd at 828.846 kb on + strand, within edd at 828.867 kb on - strand, within edd at 828.867 kb on - strand, within edd at 828.911 kb on + strand, within edd
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 825,544 - hexR HEPCGN_04730 0.29 +0.2 825,549 - hexR HEPCGN_04730 0.30 +0.8 825,605 + hexR HEPCGN_04730 0.36 -0.4 825,648 - hexR HEPCGN_04730 0.41 +0.4 825,648 - hexR HEPCGN_04730 0.41 -0.2 825,671 + hexR HEPCGN_04730 0.44 -1.0 825,699 - hexR HEPCGN_04730 0.47 +0.3 825,713 + hexR HEPCGN_04730 0.49 +1.0 825,750 + hexR HEPCGN_04730 0.53 -0.6 825,920 - hexR HEPCGN_04730 0.73 +0.6 826,229 + HEPCGN_04735 0.33 +0.2 826,229 + HEPCGN_04735 0.33 +0.0 826,230 - HEPCGN_04735 0.33 -1.6 826,288 - HEPCGN_04735 0.72 -0.6 826,413 - +0.1 826,421 + -0.3 826,422 - -0.5 826,449 - -0.8 826,451 - -0.6 826,476 + -0.3 826,477 - -1.3 826,482 - +0.6 826,655 + zwf HEPCGN_04740 0.11 -0.7 826,665 + zwf HEPCGN_04740 0.12 -0.4 826,666 - zwf HEPCGN_04740 0.12 -0.0 826,839 + zwf HEPCGN_04740 0.23 -1.3 826,921 + zwf HEPCGN_04740 0.29 -1.7 827,010 + zwf HEPCGN_04740 0.35 -0.9 827,355 + zwf HEPCGN_04740 0.58 +0.2 827,358 - zwf HEPCGN_04740 0.59 -1.3 827,493 + zwf HEPCGN_04740 0.68 -0.9 827,716 - zwf HEPCGN_04740 0.83 -1.3 827,729 + zwf HEPCGN_04740 0.84 -0.0 827,754 + zwf HEPCGN_04740 0.85 -0.9 827,787 - zwf HEPCGN_04740 0.88 -0.5 827,803 + zwf HEPCGN_04740 0.89 -1.6 827,804 - zwf HEPCGN_04740 0.89 +0.1 827,970 + +0.3 827,971 - -0.2 827,971 - +2.2 828,110 - +0.3 828,283 + -0.7 828,423 + edd HEPCGN_04745 0.12 +0.4 828,425 + edd HEPCGN_04745 0.12 -0.5 828,629 + edd HEPCGN_04745 0.23 -0.6 828,780 - edd HEPCGN_04745 0.32 +0.3 828,792 + edd HEPCGN_04745 0.32 -0.8 828,792 + edd HEPCGN_04745 0.32 +0.4 828,804 - edd HEPCGN_04745 0.33 -1.0 828,846 + edd HEPCGN_04745 0.35 +0.4 828,867 - edd HEPCGN_04745 0.37 -1.7 828,867 - edd HEPCGN_04745 0.37 -0.8 828,911 + edd HEPCGN_04745 0.39 +0.3
Or see this region's nucleotide sequence