Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04680 and yobI are separated by 70 nucleotides yobI and ruvA are separated by 138 nucleotides ruvA and ruvB are separated by 8 nucleotides ruvB and znuB are separated by 147 nucleotides znuB and znuC overlap by 4 nucleotides
HEPCGN_04680: HEPCGN_04680 - Protein, at 815,955 to 816,557
_04680
HEPCGN_04685: yobI - Uncharacterized protein YobI, at 816,628 to 816,693
yobI
HEPCGN_04690: ruvA - Holliday junction branch migration protein RuvA, at 816,832 to 817,443
ruvA
HEPCGN_04695: ruvB - Holliday junction branch migration DNA helicase RuvB, at 817,452 to 818,462
ruvB
HEPCGN_04700: znuB - zinc ABC transporter permease subunit ZnuB, at 818,610 to 819,395
znuB
HEPCGN_04705: znuC - zinc ABC transporter ATP-binding protein ZnuC, at 819,392 to 820,147
znuC
Position (kb) 817
818
819 Strain fitness (log2 ratio) -2
-1
0
1 at 816.503 kb on + strand at 816.503 kb on + strand at 816.504 kb on - strand at 816.504 kb on - strand at 816.639 kb on + strand, within yobI at 817.542 kb on + strand at 818.022 kb on + strand, within ruvB at 818.024 kb on + strand, within ruvB at 818.461 kb on - strand at 818.461 kb on - strand at 818.531 kb on - strand at 818.558 kb on + strand at 818.558 kb on + strand at 818.612 kb on - strand at 818.793 kb on - strand, within znuB at 819.009 kb on - strand, within znuB at 819.056 kb on - strand, within znuB at 819.093 kb on - strand, within znuB at 819.141 kb on + strand, within znuB at 819.180 kb on + strand, within znuB at 819.224 kb on - strand, within znuB at 819.287 kb on + strand, within znuB at 819.299 kb on - strand, within znuB at 819.306 kb on - strand, within znuB at 819.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 816,503 + +0.3 816,503 + -2.6 816,504 - -2.2 816,504 - -0.3 816,639 + yobI HEPCGN_04685 0.17 -2.3 817,542 + +0.8 818,022 + ruvB HEPCGN_04695 0.56 -1.9 818,024 + ruvB HEPCGN_04695 0.57 -0.5 818,461 - -0.1 818,461 - +0.5 818,531 - -0.3 818,558 + +0.3 818,558 + +1.4 818,612 - -0.9 818,793 - znuB HEPCGN_04700 0.23 +0.1 819,009 - znuB HEPCGN_04700 0.51 -1.9 819,056 - znuB HEPCGN_04700 0.57 +0.4 819,093 - znuB HEPCGN_04700 0.61 +0.4 819,141 + znuB HEPCGN_04700 0.68 +0.1 819,180 + znuB HEPCGN_04700 0.73 -0.8 819,224 - znuB HEPCGN_04700 0.78 -0.3 819,287 + znuB HEPCGN_04700 0.86 -1.7 819,299 - znuB HEPCGN_04700 0.88 -2.4 819,306 - znuB HEPCGN_04700 0.89 +0.3 819,452 - -2.6
Or see this region's nucleotide sequence