Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04365 and HEPCGN_04380 are separated by 322 nucleotides HEPCGN_04380 and marR overlap by 4 nucleotides marR and HEPCGN_04390 overlap by 4 nucleotides HEPCGN_04390 and HEPCGN_04395 are separated by 23 nucleotides HEPCGN_04395 and HEPCGN_04400 are separated by 92 nucleotides HEPCGN_04400 and HEPCGN_04405 overlap by 4 nucleotides HEPCGN_04405 and HEPCGN_04410 are separated by 11 nucleotides
HEPCGN_04365: HEPCGN_04365 - derepression protein, at 768,146 to 768,376
_04365
HEPCGN_04380: HEPCGN_04380 - hypothetical protein, at 768,699 to 768,998
_04380
HEPCGN_04385: marR - MarR family transcriptional regulator, at 768,995 to 769,261
marR
HEPCGN_04390: HEPCGN_04390 - hypothetical protein, at 769,258 to 769,461
_04390
HEPCGN_04395: HEPCGN_04395 - Phage protein, at 769,485 to 769,901
_04395
HEPCGN_04400: HEPCGN_04400 - Membrane protein, at 769,994 to 770,107
_04400
HEPCGN_04405: HEPCGN_04405 - DUF4754 domain-containing protein, at 770,104 to 770,346
_04405
HEPCGN_04410: HEPCGN_04410 - hypothetical protein, at 770,358 to 770,636
_04410
Position (kb) 769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 768.397 kb on - strand at 768.550 kb on - strand at 768.589 kb on - strand at 768.756 kb on + strand, within HEPCGN_04380 at 769.177 kb on + strand, within marR at 769.178 kb on - strand, within marR at 769.178 kb on - strand, within marR at 769.178 kb on - strand, within marR at 769.178 kb on - strand, within marR at 769.222 kb on + strand, within marR at 769.245 kb on + strand at 769.246 kb on - strand at 769.277 kb on - strand at 769.322 kb on + strand, within HEPCGN_04390 at 769.340 kb on + strand, within HEPCGN_04390 at 769.340 kb on + strand, within HEPCGN_04390 at 769.340 kb on + strand, within HEPCGN_04390 at 769.341 kb on - strand, within HEPCGN_04390 at 769.341 kb on - strand, within HEPCGN_04390 at 769.341 kb on - strand, within HEPCGN_04390 at 769.487 kb on - strand at 769.487 kb on - strand at 769.524 kb on + strand at 769.600 kb on + strand, within HEPCGN_04395 at 769.715 kb on + strand, within HEPCGN_04395 at 769.904 kb on + strand at 769.905 kb on - strand at 769.970 kb on + strand at 770.219 kb on + strand, within HEPCGN_04405 at 770.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 768,397 - -0.4 768,550 - -2.0 768,589 - -1.0 768,756 + HEPCGN_04380 0.19 +0.0 769,177 + marR HEPCGN_04385 0.68 -1.0 769,178 - marR HEPCGN_04385 0.69 -0.1 769,178 - marR HEPCGN_04385 0.69 -0.3 769,178 - marR HEPCGN_04385 0.69 +1.5 769,178 - marR HEPCGN_04385 0.69 +0.1 769,222 + marR HEPCGN_04385 0.85 +1.2 769,245 + -0.3 769,246 - +0.2 769,277 - -3.7 769,322 + HEPCGN_04390 0.31 -0.5 769,340 + HEPCGN_04390 0.40 -1.5 769,340 + HEPCGN_04390 0.40 -2.1 769,340 + HEPCGN_04390 0.40 -0.6 769,341 - HEPCGN_04390 0.41 -0.5 769,341 - HEPCGN_04390 0.41 -0.3 769,341 - HEPCGN_04390 0.41 -1.5 769,487 - -1.8 769,487 - -1.4 769,524 + -0.1 769,600 + HEPCGN_04395 0.28 -0.2 769,715 + HEPCGN_04395 0.55 -1.0 769,904 + +0.6 769,905 - +0.1 769,970 + -0.4 770,219 + HEPCGN_04405 0.47 +0.3 770,360 - -0.4
Or see this region's nucleotide sequence