Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliQ and fliP are separated by 9 nucleotides fliP and fliO overlap by 1 nucleotides fliO and fliN are separated by 2 nucleotides fliN and fliM overlap by 4 nucleotides
HEPCGN_04020: fliQ - flagellar biosynthesis protein FliQ, at 706,468 to 706,737
fliQ
HEPCGN_04025: fliP - flagellar type III secretion system pore protein FliP, at 706,747 to 707,484
fliP
HEPCGN_04030: fliO - flagellar type III secretion system protein FliO, at 707,484 to 707,849
fliO
HEPCGN_04035: fliN - flagellar motor switch protein FliN, at 707,852 to 708,265
fliN
HEPCGN_04040: fliM - flagellar motor switch protein FliM, at 708,262 to 709,266
fliM
Position (kb) 707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 706.512 kb on - strand, within fliQ at 706.548 kb on + strand, within fliQ at 706.565 kb on - strand, within fliQ at 706.584 kb on + strand, within fliQ at 706.754 kb on + strand at 707.185 kb on - strand, within fliP at 707.221 kb on + strand, within fliP at 707.229 kb on + strand, within fliP at 707.229 kb on + strand, within fliP at 707.229 kb on + strand, within fliP at 707.280 kb on + strand, within fliP at 707.280 kb on + strand, within fliP at 707.393 kb on - strand, within fliP at 707.576 kb on + strand, within fliO at 707.834 kb on + strand at 707.834 kb on + strand at 707.913 kb on + strand, within fliN at 707.951 kb on + strand, within fliN at 708.250 kb on + strand at 708.250 kb on + strand at 708.250 kb on + strand at 708.293 kb on - strand at 708.316 kb on + strand at 708.618 kb on + strand, within fliM at 708.621 kb on + strand, within fliM at 708.772 kb on - strand, within fliM at 708.772 kb on - strand, within fliM
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 706,512 - fliQ HEPCGN_04020 0.16 -0.8 706,548 + fliQ HEPCGN_04020 0.30 +1.5 706,565 - fliQ HEPCGN_04020 0.36 +0.3 706,584 + fliQ HEPCGN_04020 0.43 -0.1 706,754 + -0.4 707,185 - fliP HEPCGN_04025 0.59 +0.5 707,221 + fliP HEPCGN_04025 0.64 +0.1 707,229 + fliP HEPCGN_04025 0.65 -0.5 707,229 + fliP HEPCGN_04025 0.65 -0.4 707,229 + fliP HEPCGN_04025 0.65 -0.9 707,280 + fliP HEPCGN_04025 0.72 -0.1 707,280 + fliP HEPCGN_04025 0.72 -0.3 707,393 - fliP HEPCGN_04025 0.88 +0.4 707,576 + fliO HEPCGN_04030 0.25 -1.4 707,834 + -0.1 707,834 + -0.1 707,913 + fliN HEPCGN_04035 0.15 -0.7 707,951 + fliN HEPCGN_04035 0.24 +0.4 708,250 + +0.1 708,250 + +1.3 708,250 + +1.6 708,293 - +1.2 708,316 + -2.8 708,618 + fliM HEPCGN_04040 0.35 +1.5 708,621 + fliM HEPCGN_04040 0.36 -0.9 708,772 - fliM HEPCGN_04040 0.51 +1.1 708,772 - fliM HEPCGN_04040 0.51 +0.4
Or see this region's nucleotide sequence