Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03830 and HEPCGN_03835 are separated by 8 nucleotides HEPCGN_03835 and HEPCGN_03840 are separated by 14 nucleotides HEPCGN_03840 and HEPCGN_03845 are separated by 11 nucleotides HEPCGN_03845 and HEPCGN_03850 are separated by 46 nucleotides
HEPCGN_03830: HEPCGN_03830 - DUF3168 domain-containing protein, at 671,763 to 672,107
_03830
HEPCGN_03835: HEPCGN_03835 - phage tail protein, at 672,116 to 672,871
_03835
HEPCGN_03840: HEPCGN_03840 - phage tail protein, at 672,886 to 673,257
_03840
HEPCGN_03845: HEPCGN_03845 - phage tail protein, at 673,269 to 673,559
_03845
HEPCGN_03850: HEPCGN_03850 - phage tail tape measure protein, at 673,606 to 676,845
_03850
Position (kb) 672
673
674 Strain fitness (log2 ratio) -2
-1
0
1 at 671.937 kb on - strand, within HEPCGN_03830 at 672.032 kb on + strand, within HEPCGN_03830 at 672.033 kb on - strand, within HEPCGN_03830 at 672.098 kb on - strand at 672.100 kb on + strand at 672.166 kb on + strand at 672.167 kb on - strand at 672.254 kb on + strand, within HEPCGN_03835 at 672.255 kb on - strand, within HEPCGN_03835 at 672.272 kb on - strand, within HEPCGN_03835 at 672.402 kb on - strand, within HEPCGN_03835 at 672.437 kb on + strand, within HEPCGN_03835 at 672.455 kb on + strand, within HEPCGN_03835 at 672.456 kb on - strand, within HEPCGN_03835 at 672.456 kb on - strand, within HEPCGN_03835 at 672.493 kb on + strand, within HEPCGN_03835 at 672.520 kb on + strand, within HEPCGN_03835 at 672.520 kb on + strand, within HEPCGN_03835 at 672.521 kb on - strand, within HEPCGN_03835 at 672.581 kb on - strand, within HEPCGN_03835 at 672.625 kb on - strand, within HEPCGN_03835 at 672.794 kb on + strand, within HEPCGN_03835 at 672.794 kb on + strand, within HEPCGN_03835 at 672.795 kb on - strand, within HEPCGN_03835 at 672.845 kb on - strand at 672.904 kb on - strand at 672.980 kb on + strand, within HEPCGN_03840 at 672.980 kb on + strand, within HEPCGN_03840 at 672.980 kb on + strand, within HEPCGN_03840 at 673.224 kb on - strand at 673.255 kb on + strand at 673.543 kb on + strand at 673.544 kb on - strand at 673.617 kb on - strand at 673.617 kb on - strand at 673.632 kb on + strand at 673.686 kb on + strand at 673.686 kb on + strand at 673.686 kb on + strand at 673.703 kb on - strand at 673.708 kb on - strand at 673.708 kb on - strand at 673.708 kb on - strand at 673.791 kb on + strand at 673.792 kb on - strand at 673.887 kb on - strand at 674.032 kb on + strand, within HEPCGN_03850 at 674.033 kb on - strand, within HEPCGN_03850
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 671,937 - HEPCGN_03830 0.50 +0.7 672,032 + HEPCGN_03830 0.78 -0.1 672,033 - HEPCGN_03830 0.78 +0.9 672,098 - -0.2 672,100 + -0.5 672,166 + +0.6 672,167 - -0.3 672,254 + HEPCGN_03835 0.18 -0.6 672,255 - HEPCGN_03835 0.18 -0.6 672,272 - HEPCGN_03835 0.21 -0.6 672,402 - HEPCGN_03835 0.38 -0.3 672,437 + HEPCGN_03835 0.42 -0.0 672,455 + HEPCGN_03835 0.45 +0.9 672,456 - HEPCGN_03835 0.45 -0.6 672,456 - HEPCGN_03835 0.45 -0.2 672,493 + HEPCGN_03835 0.50 -0.4 672,520 + HEPCGN_03835 0.53 -0.1 672,520 + HEPCGN_03835 0.53 -0.0 672,521 - HEPCGN_03835 0.54 +0.1 672,581 - HEPCGN_03835 0.62 +0.2 672,625 - HEPCGN_03835 0.67 +0.6 672,794 + HEPCGN_03835 0.90 +0.2 672,794 + HEPCGN_03835 0.90 +0.2 672,795 - HEPCGN_03835 0.90 -0.3 672,845 - -0.3 672,904 - -0.3 672,980 + HEPCGN_03840 0.25 -2.0 672,980 + HEPCGN_03840 0.25 -0.8 672,980 + HEPCGN_03840 0.25 -0.2 673,224 - -1.0 673,255 + +0.1 673,543 + -0.2 673,544 - +0.4 673,617 - +0.8 673,617 - -0.4 673,632 + -1.8 673,686 + -1.8 673,686 + -0.4 673,686 + +0.3 673,703 - -0.1 673,708 - -0.6 673,708 - -0.9 673,708 - -1.5 673,791 + -0.1 673,792 - -0.1 673,887 - -0.4 674,032 + HEPCGN_03850 0.13 -0.6 674,033 - HEPCGN_03850 0.13 -1.3
Or see this region's nucleotide sequence