Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03695 and HEPCGN_03705 are separated by 685 nucleotides HEPCGN_03705 and HEPCGN_03710 are separated by 216 nucleotides HEPCGN_03710 and HEPCGN_03715 are separated by 346 nucleotides
HEPCGN_03695: HEPCGN_03695 - Uncharacterized protein YmfE, at 656,579 to 657,274
_03695
HEPCGN_03705: HEPCGN_03705 - protein hokC, at 657,960 to 658,172
_03705
HEPCGN_03710: HEPCGN_03710 - Uncharacterized protein Rem, at 658,389 to 658,640
_03710
HEPCGN_03715: HEPCGN_03715 - DUF968 domain-containing protein, at 658,987 to 660,036
_03715
Position (kb) 657
658
659 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 657.035 kb on + strand, within HEPCGN_03695 at 657.142 kb on - strand, within HEPCGN_03695 at 657.537 kb on + strand at 657.537 kb on + strand at 657.538 kb on - strand at 657.538 kb on - strand at 657.648 kb on + strand at 657.753 kb on + strand at 657.785 kb on - strand at 657.832 kb on + strand at 657.837 kb on - strand at 657.910 kb on + strand at 657.936 kb on + strand at 657.959 kb on + strand at 657.960 kb on - strand at 657.960 kb on - strand at 657.960 kb on - strand at 657.966 kb on + strand at 657.975 kb on - strand at 657.988 kb on - strand, within HEPCGN_03705 at 658.469 kb on + strand, within HEPCGN_03710 at 658.583 kb on - strand, within HEPCGN_03710 at 658.909 kb on + strand at 658.997 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 657,035 + HEPCGN_03695 0.66 -2.3 657,142 - HEPCGN_03695 0.81 +0.7 657,537 + +0.0 657,537 + +0.6 657,538 - +0.8 657,538 - -0.8 657,648 + -0.7 657,753 + -1.6 657,785 - +1.6 657,832 + -1.2 657,837 - -0.1 657,910 + -2.9 657,936 + -2.9 657,959 + -0.9 657,960 - -1.1 657,960 - -1.0 657,960 - -1.2 657,966 + -0.4 657,975 - -0.2 657,988 - HEPCGN_03705 0.13 -0.6 658,469 + HEPCGN_03710 0.32 -1.7 658,583 - HEPCGN_03710 0.77 +0.1 658,909 + -0.1 658,997 + -0.6
Or see this region's nucleotide sequence