Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03315 and HEPCGN_03320 are separated by 88 nucleotides HEPCGN_03320 and yeeT are separated by 193 nucleotides yeeT and yeeS are separated by 62 nucleotides yeeS and HEPCGN_03335 are separated by 14 nucleotides HEPCGN_03335 and HEPCGN_03340 are separated by 81 nucleotides
HEPCGN_03315: HEPCGN_03315 - toxin of the YeeV-YeeU toxin-antitoxin system, at 571,701 to 571,964
_03315
HEPCGN_03320: HEPCGN_03320 - Antitoxin of the YeeV-YeeU toxin-antitoxin system CP4-44 prophage, at 572,053 to 572,301
_03320
HEPCGN_03325: yeeT - Uncharacterized protein YeeT, at 572,495 to 572,716
yeeT
HEPCGN_03330: yeeS - UPF0758 protein YeeS, at 572,779 to 573,255
yeeS
HEPCGN_03335: HEPCGN_03335 - restriction endonuclease, at 573,270 to 573,749
_03335
HEPCGN_03340: HEPCGN_03340 - DUF945 domain-containing protein, at 573,831 to 574,652
_03340
Position (kb) 572
573
574 Strain fitness (log2 ratio) -1
0
1 at 571.893 kb on + strand, within HEPCGN_03315 at 571.893 kb on + strand, within HEPCGN_03315 at 571.893 kb on + strand, within HEPCGN_03315 at 571.894 kb on - strand, within HEPCGN_03315 at 571.948 kb on - strand at 571.992 kb on + strand at 571.992 kb on + strand at 572.079 kb on - strand, within HEPCGN_03320 at 572.526 kb on + strand, within yeeT at 572.581 kb on + strand, within yeeT at 572.604 kb on + strand, within yeeT at 572.604 kb on + strand, within yeeT at 572.641 kb on + strand, within yeeT at 572.872 kb on + strand, within yeeS at 573.259 kb on - strand at 573.288 kb on - strand at 573.385 kb on + strand, within HEPCGN_03335
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 571,893 + HEPCGN_03315 0.73 +0.5 571,893 + HEPCGN_03315 0.73 +0.7 571,893 + HEPCGN_03315 0.73 -0.4 571,894 - HEPCGN_03315 0.73 -0.1 571,948 - -0.8 571,992 + +0.7 571,992 + +0.3 572,079 - HEPCGN_03320 0.10 -0.5 572,526 + yeeT HEPCGN_03325 0.14 -0.3 572,581 + yeeT HEPCGN_03325 0.39 -1.5 572,604 + yeeT HEPCGN_03325 0.49 -0.3 572,604 + yeeT HEPCGN_03325 0.49 +0.0 572,641 + yeeT HEPCGN_03325 0.66 +0.6 572,872 + yeeS HEPCGN_03330 0.19 -0.7 573,259 - -0.3 573,288 - +0.7 573,385 + HEPCGN_03335 0.24 +0.5
Or see this region's nucleotide sequence