Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02450 and HEPCGN_02455 are separated by 356 nucleotides HEPCGN_02455 and HEPCGN_02460 are separated by 75 nucleotides HEPCGN_02460 and HEPCGN_02465 are separated by 4 nucleotides HEPCGN_02465 and HEPCGN_02470 are separated by 95 nucleotides
HEPCGN_02450: HEPCGN_02450 - 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 396,981 to 398,942
_02450
HEPCGN_02455: HEPCGN_02455 - DUF826 domain-containing protein, at 399,299 to 399,568
_02455
HEPCGN_02460: HEPCGN_02460 - holin, at 399,644 to 399,859
_02460
HEPCGN_02465: HEPCGN_02465 - Phage protein, at 399,864 to 400,352
_02465
HEPCGN_02470: HEPCGN_02470 - DUF1327 domain-containing protein, at 400,448 to 400,852
_02470
Position (kb) 399
400 Strain fitness (log2 ratio) -2
-1
0
1 at 398.520 kb on - strand, within HEPCGN_02450 at 398.866 kb on + strand at 398.867 kb on - strand at 398.883 kb on + strand at 398.885 kb on + strand at 399.087 kb on - strand at 399.107 kb on - strand at 399.130 kb on - strand at 399.130 kb on - strand at 399.130 kb on - strand at 399.130 kb on - strand at 399.133 kb on + strand at 399.134 kb on - strand at 399.134 kb on - strand at 399.151 kb on + strand at 399.529 kb on + strand, within HEPCGN_02455 at 399.566 kb on + strand at 399.567 kb on - strand at 399.567 kb on - strand at 399.567 kb on - strand at 399.644 kb on - strand at 399.644 kb on - strand at 399.902 kb on + strand at 399.903 kb on - strand at 399.903 kb on - strand at 399.920 kb on + strand, within HEPCGN_02465 at 399.984 kb on - strand, within HEPCGN_02465 at 400.020 kb on + strand, within HEPCGN_02465 at 400.149 kb on + strand, within HEPCGN_02465 at 400.175 kb on + strand, within HEPCGN_02465 at 400.328 kb on + strand at 400.328 kb on + strand at 400.351 kb on - strand at 400.557 kb on + strand, within HEPCGN_02470 at 400.557 kb on + strand, within HEPCGN_02470
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 398,520 - HEPCGN_02450 0.78 -0.2 398,866 + -2.0 398,867 - -1.4 398,883 + +1.4 398,885 + +0.4 399,087 - +0.6 399,107 - -0.0 399,130 - -0.9 399,130 - +0.3 399,130 - -0.5 399,130 - +0.0 399,133 + -0.2 399,134 - -0.5 399,134 - -0.2 399,151 + +0.5 399,529 + HEPCGN_02455 0.85 -0.7 399,566 + -0.6 399,567 - +0.6 399,567 - -0.3 399,567 - +0.2 399,644 - -0.1 399,644 - -0.3 399,902 + -0.7 399,903 - +0.0 399,903 - +0.1 399,920 + HEPCGN_02465 0.11 +0.4 399,984 - HEPCGN_02465 0.25 -0.3 400,020 + HEPCGN_02465 0.32 +0.9 400,149 + HEPCGN_02465 0.58 +1.5 400,175 + HEPCGN_02465 0.64 -0.6 400,328 + -0.1 400,328 + +0.7 400,351 - -0.2 400,557 + HEPCGN_02470 0.27 -0.1 400,557 + HEPCGN_02470 0.27 +0.4
Or see this region's nucleotide sequence